Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,326,152 – 9,326,250 |
Length | 98 |
Max. P | 0.589801 |
Location | 9,326,152 – 9,326,250 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.21 |
Mean single sequence MFE | -19.23 |
Consensus MFE | -10.27 |
Energy contribution | -10.05 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.27 |
Mean z-score | -1.80 |
Structure conservation index | 0.53 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589801 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9326152 98 + 22407834 UACC-----CCUCAA----CCGAACAGCAUCCGAAACCACAGGCAUCGCAAAGUCUAACCGCAACAAUUGGCUAACAAGUUGUCGCUGGUCAAC---------AGUUCAUACAACA ....-----......----..((((.((((((.........)).)).))...((...(((((.((((((........)))))).)).)))..))---------.))))........ ( -17.00) >DroPse_CAF1 185019 106 + 1 UUCC-----GC-CCC----CUGGGCACUCCCCCAAGCCACAACCAUCUCAAAGUCUAACCACAACAAUUGGCCAACAAGUUGUCGCUGGCCAACAACAACAACAACUCUGGCAACA ....-----((-((.----..))))..........((((.............((......)).....(((((((.(........).)))))))...............)))).... ( -21.50) >DroSim_CAF1 159293 98 + 1 UACC-----CCUCAA----CCGAACAUCCUCAAAAACCACAGGCAUCGCAAAGUCUAACCGCAACAAUUGGCCAACAAGUUGUCGCUGGUCAAC---------AGUUCAUACAACA ....-----......----..((((...............((((........)))).(((((.((((((........)))))).)).)))....---------.))))........ ( -16.60) >DroEre_CAF1 167843 98 + 1 AGCC-----GCUGAA----CAGAACAGCCUCCCAAACCACAGGCAUCGCAAAGUCUAACCGCAACAAUUGGCCAACAAGUUGUCGCUGGUCAAC---------AGUUCAUGCAACA ....-----((((((----(......((((..........))))........((...(((((.((((((........)))))).)).)))..))---------.))))).)).... ( -22.70) >DroYak_CAF1 165010 98 + 1 GAUC-----CGUCAA----CAGAAAAGCCUGCAAAACCACAGGCAUCGCAAAGUCUAACCGCAACAAUUGGCCAACAAGUUGUCGCUGGUCAAC---------AGUUCAUACAACA ....-----.(((((----.......(((((........)))))...((...........)).....)))))......(((((.((((.....)---------)))....))))). ( -20.50) >DroAna_CAF1 156746 102 + 1 UACCGACAUCCUCAAUCCUCUGAAAA-----AGAAACUUCAGGCAUCUCAAAGUCUAACCACAACAAUUGGCCAACAAGUUGUCGCUGGCCAAC---------UGCUCUGACAACA ..................(((.....-----)))....(((((((.......((......)).....(((((((.(........).))))))).---------))).))))..... ( -17.10) >consensus UACC_____CCUCAA____CAGAACAGCCUCCAAAACCACAGGCAUCGCAAAGUCUAACCGCAACAAUUGGCCAACAAGUUGUCGCUGGUCAAC_________AGUUCAUACAACA .....................(((................((((........))))...........(((((((.(........).)))))))............)))........ (-10.27 = -10.05 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:49 2006