Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,325,173 – 9,325,263 |
Length | 90 |
Max. P | 0.588720 |
Location | 9,325,173 – 9,325,263 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 85.12 |
Mean single sequence MFE | -18.08 |
Consensus MFE | -13.82 |
Energy contribution | -13.82 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.76 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9325173 90 + 22407834 AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAG---CAACAGAAGCGCCUCUACCCCGCCCUACCC-CAAA-AAUUUCC ...((((((...((((((.........))))))..)))))).((....)---).......(((.........))).......-....-....... ( -15.80) >DroSec_CAF1 154357 93 + 1 AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAGCAGCAACAGAAGCGCCUCUACCUCGCCCUACCC-CAAA-AAUUCCA ...((((((...((((((.........))))))..)))))).......((.((.......))))..................-....-....... ( -16.00) >DroSim_CAF1 158391 93 + 1 AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAGCAGCAACAGAAGCGCCUCUGCCUCGCCCUACCC-CAAA-AAUUCCC ...((((((...((((((.........))))))..)))))).((....)).((..((((......))))....)).......-....-....... ( -17.80) >DroEre_CAF1 166799 89 + 1 AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAG---CAACAG-AGCGCCUCCAACUCCCCCAGCCC-CGAA-AAUUCCC ...((((((...((((((.........))))))..)))))).......(---(.....-.))....................-....-....... ( -15.40) >DroYak_CAF1 163861 91 + 1 AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAG---CAACAGAAGCGCCUCCAAAUCUCCCAGCCCCCCAA-AAUUCCC ...((((((...((((((.........))))))..)))))).......(---(.......)).........................-....... ( -14.90) >DroAna_CAF1 155896 91 + 1 AACGCUGCAUUUCAAUUGAAAUAACAAUAAUUGUUUGCAGCAGCCAGUG---GGGCAGCAAUCCCUCGA-CUCGCCCCAUCCCCUAUCCCUUGGC ...((((((...((((((.........))))))..)))))).(((((((---(((((((........).-)).)))))))...........)))) ( -28.60) >consensus AACGCUGCAUUUCAAUUGGAAUAACAAUAAUUGUUUGCAGCAGCCACAG___CAACAGAAGCGCCUCUACCUCGCCCUACCC_CAAA_AAUUCCC ...((((((...((((((.........))))))..))))))...................................................... (-13.82 = -13.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:48 2006