Locus 3239

Sequence ID 2L_DroMel_CAF1
Location 9,313,842 – 9,313,933
Length 91
Max. P 0.656622
window5147

overview

Window 7

Location 9,313,842 – 9,313,933
Length 91
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 78.27
Mean single sequence MFE -27.57
Consensus MFE -13.12
Energy contribution -12.40
Covariance contribution -0.72
Combinations/Pair 1.32
Mean z-score -2.12
Structure conservation index 0.48
SVM decision value 0.26
SVM RNA-class probability 0.656622
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9313842 91 + 22407834
UGGCUCUUUGUUCCAGUUUGAUUUGGUGCUCAAAUUGGAAACGGUGUUAUGUGAACUAGAUGGAGCAUAGA---CAUUGGACAAAAA-GGGCGCA--
..(((((((.(((((((((((........))))))))))).(((((((((((...(.....)..)))).))---))))).....)))-))))...-- ( -29.90)
>DroGri_CAF1 230154 90 + 1
AAUGUCUUUGUCCCAGUUCGAUUUGAUGUUCAAAUUGGAAAUGGUGUUAUGUGAGCUAUAUGGAGCAUGCA---CUGAGCUCAGAC--AGAGGCA--
..(((((((((((((.(((((((((.....)))))))))..))).......((((((...((.......))---...)))))))))--)))))))-- ( -31.00)
>DroSim_CAF1 146478 90 + 1
UGGCUCUUUGUCCCAGUUUGAUUUGGUGCUCAAAUUGGAAACGGUGUUAUGUGAACUAGAUGGAGCAUAGA---CAUUGGCCAA-AA-GGGGGCA--
((((.(..((((...((((.(((((((.(.((.((((....))))....)).).))))))).))))...))---))..))))).-..-.......-- ( -27.10)
>DroYak_CAF1 152171 92 + 1
UGGCUCUUUGUCCCAGUUUGAUUUGGUGCUCAAAUUGGAAAUGGUGUUAUGUGAACUAGAUGGAGCAUAGA---CAUUGGCCAAAAGCGGGGGCA--
((((.(..(((((((((((((........))))))))).........(((((...(.....)..)))))))---))..)))))...((....)).-- ( -25.80)
>DroMoj_CAF1 268975 92 + 1
AAUGUCUUUGUCCCAGUUCGAUUUUAUGUUCGAAUUGGAAAUGGUGUUAGGUAAGCUAGAUGAACCAUGCA---CUGAGCUCAAACACAGAGCCU--
....((..(((.(((((((((........)))))))))..(((((.((((.....))))....))))))))---..))((((.......))))..-- ( -25.20)
>DroAna_CAF1 144328 96 + 1
AGUGUCUUUGUCCCAGUUCGAUUUUGUGUUCAAAUUGGAAACGGUGUUAUGUGAACUAGAUGGAGCAUGCAAGCCCCAGGGAGAGAA-GAUGGCAUG
...((((((.(((((((((((........))..((((....)))).......)))))...(((.((......)).)))))))..)))-)))...... ( -26.40)
>consensus
AGGCUCUUUGUCCCAGUUCGAUUUGGUGCUCAAAUUGGAAACGGUGUUAUGUGAACUAGAUGGAGCAUACA___CAUAGGCCAAAAA_GGGGGCA__
...(((((..(((((((((((........)))))))))....(((.........))).))..)))...))........................... (-13.12 = -12.40 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:45 2006