Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,297,897 – 9,297,990 |
Length | 93 |
Max. P | 0.993210 |
Location | 9,297,897 – 9,297,990 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 97.85 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -27.76 |
Energy contribution | -28.16 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.93 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9297897 93 + 22407834 CUCAGGUGAGCGAACAGAAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA (((((....((...(((...(((....((((((......))))))((((((((......)))))))))))......)))....)).))))).. ( -30.10) >DroSec_CAF1 127303 93 + 1 CUCAGGUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA ((((((((.((........)))))...((((((......))))))((((((((......))))))))........(((....))).))))).. ( -30.00) >DroSim_CAF1 130317 93 + 1 CUCAGGUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA ((((((((.((........)))))...((((((......))))))((((((((......))))))))........(((....))).))))).. ( -30.00) >DroEre_CAF1 137734 93 + 1 CUCAGGUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCCCUGGGAUUUAUCACAGCUCGGAAAAAGCUGGAAAGUGCUGGGAA ....((((.((........))))))..((((((......))))))...((..(.((((.((.(((((.......))))))))))).)..)).. ( -28.90) >DroYak_CAF1 135599 93 + 1 CUCAGAUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA (((((....((...(((...(((....((((((......))))))((((((((......)))))))))))......)))....)).))))).. ( -30.10) >consensus CUCAGGUGAGCGAACAGGAGCCGCUAAGGCAGUCAACGAACUGUCAGCACUGGGAUUUAUCAGUGCUCGGAAAAAGCUGGAAAGUGCUGGGAA (((((....((...(((...(((....((((((......))))))((((((((......)))))))))))......)))....)).))))).. (-27.76 = -28.16 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:39 2006