Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,278,344 – 9,278,441 |
Length | 97 |
Max. P | 0.889655 |
Location | 9,278,344 – 9,278,441 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -23.06 |
Consensus MFE | -16.90 |
Energy contribution | -19.03 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.15 |
Mean z-score | -2.14 |
Structure conservation index | 0.73 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9278344 97 + 22407834 UAAAUUCUUUCGAAGCCAACAUCUAAGUCAACUCUAUCGGCUUCAGAAUGCUUAGUUGCAGCUAAGAAUUCUAAGAAUGUCUGAGCUUCAAAGGAAA ....((((((.((((((((((((((((((.........))))).(((((.((((((....)))))).))))).)).)))).)).))))).)))))). ( -27.60) >DroSec_CAF1 108377 97 + 1 UAAAUUCUUCCGAAGCCAACAUCUAAGUCAACUCUAUCGGCUUUAGAAUGCUUAGGUGCAGCUAAGAAUUCUAAGAAUGUCUGAGCCUCAAAGGAAA ....(((((..((.(((((((((((((((.........)))))((((((.(((((......))))).)))))))).)))).)).)).))..))))). ( -21.60) >DroSim_CAF1 110490 97 + 1 UAAAUUCUUUCGUAGCCAACAUCUAAGUCAACUCUAUCGGCUUUAGAAUGCUUAGUUGCAGCUAAGAAUUCUAAGAAUGUCUGAGCCUCAAAGGAAA ....((((((.(..(((((((((((((((.........)))))((((((.((((((....)))))).)))))))).)))).)).))..).)))))). ( -23.70) >DroYak_CAF1 115875 93 + 1 UACAUUUCUUCGAGGACAACAUCU----CAACUCUAUUUGCUGCGAAAUGCUUAGUUGCAGCUAAGAAUGCUAAGAAUGUCUGAGUCUCAAAGGAAA ....((((((.((((.((((((((----...........(((((((.........)))))))...........)).)))).))..)))).)))))). ( -19.35) >consensus UAAAUUCUUUCGAAGCCAACAUCUAAGUCAACUCUAUCGGCUUCAGAAUGCUUAGUUGCAGCUAAGAAUUCUAAGAAUGUCUGAGCCUCAAAGGAAA ....((((((.((((((((((((((((((.........))))).(((((.(((((......))))).))))).)).)))).)).))))).)))))). (-16.90 = -19.03 + 2.13)
Location | 9,278,344 – 9,278,441 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -19.12 |
Energy contribution | -19.88 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.15 |
Mean z-score | -2.41 |
Structure conservation index | 0.74 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9278344 97 - 22407834 UUUCCUUUGAAGCUCAGACAUUCUUAGAAUUCUUAGCUGCAACUAAGCAUUCUGAAGCCGAUAGAGUUGACUUAGAUGUUGGCUUCGAAAGAAUUUA .(((.(((((((((..((((((.(((((((.(((((......))))).)))))))........(((....))).))))))))))))))).))).... ( -26.90) >DroSec_CAF1 108377 97 - 1 UUUCCUUUGAGGCUCAGACAUUCUUAGAAUUCUUAGCUGCACCUAAGCAUUCUAAAGCCGAUAGAGUUGACUUAGAUGUUGGCUUCGGAAGAAUUUA (((((.....((((.........(((((((.(((((......))))).)))))))))))....((((..((......))..)))).)))))...... ( -26.10) >DroSim_CAF1 110490 97 - 1 UUUCCUUUGAGGCUCAGACAUUCUUAGAAUUCUUAGCUGCAACUAAGCAUUCUAAAGCCGAUAGAGUUGACUUAGAUGUUGGCUACGAAAGAAUUUA .(((.((((.((((.........(((((((.(((((......))))).))))))))))).....(((..((......))..))).)))).))).... ( -24.60) >DroYak_CAF1 115875 93 - 1 UUUCCUUUGAGACUCAGACAUUCUUAGCAUUCUUAGCUGCAACUAAGCAUUUCGCAGCAAAUAGAGUUG----AGAUGUUGUCCUCGAAGAAAUGUA ....(((((((((...(((((.((((((..(((..(((((.............)))))....)))))))----))))))))).)))))))....... ( -25.42) >consensus UUUCCUUUGAGGCUCAGACAUUCUUAGAAUUCUUAGCUGCAACUAAGCAUUCUAAAGCCGAUAGAGUUGACUUAGAUGUUGGCUUCGAAAGAAUUUA .(((.(((((((((..((((((.(((((((.(((((......))))).)))))))(((.......)))......))))))))))))))).))).... (-19.12 = -19.88 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:35 2006