Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,254,566 – 9,254,686 |
Length | 120 |
Max. P | 0.623177 |
Location | 9,254,566 – 9,254,686 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -32.41 |
Consensus MFE | -20.08 |
Energy contribution | -20.45 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.22 |
Mean z-score | -2.37 |
Structure conservation index | 0.62 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9254566 120 - 22407834 AAAUGCAACAGAAAAUAGUGAGGAUCGAAAGAUCGAUAGAAGAACGAUUGAUGGCCAUGCAAAGCAAGUUGGCAUACGCACUGAACGAGCUGCAGACCAUAAUGGGCAACCAGAGUGUGG ...((((........(((((.(((((....))))...................(((((((...)))...))))...).))))).......))))..(((((.(((....)))...))))) ( -32.46) >DroSec_CAF1 84534 120 - 1 AAAUACAACAGAAAAUUGUGAGGAUCGAAAGAUCGAUUGAAGAACGAUUGAUGGCCAUGCAAAGCAAGUUGGCAUACGCACUGCAUGAGCUGCAGACCAUAAUGGGCAACCAGAGCGUGG ........((...((((((...((((((....)))))).....))))))..))(((((((...)))...)))).(((((.(((((.....))))).......(((....)))..))))). ( -34.30) >DroSim_CAF1 86430 120 - 1 AAAUACAACAGAAAAUUGUGAGGAUCGAAAGAUCGAUUGAAGAACGAUUGACGGCCAUGCAAAGCAAGUUGGCAUACGCACUGCAUGAGCUGCAGACCAUAAUGGGCAACCAGAGCGUGG ...(((((.......)))))..((((....))))(((((.....)))))....(((((((...)))...)))).(((((.(((((.....))))).......(((....)))..))))). ( -33.60) >DroEre_CAF1 91434 120 - 1 AAAUUCAACAGAAACUCGAGAUAUUCGAGAGGACGAUUGAAGGACGAUUGAUGGUCCUGCAAAACAAGUUGAGAUACGAGCUGAAUGAGCUCCAGACCAUAAUAGGAAACAAGAGCAAGG ...((((((.....((((((...))))))(((((.((..(.......)..)).))))).........))))))....(((((.....)))))............(....).......... ( -29.30) >consensus AAAUACAACAGAAAAUUGUGAGGAUCGAAAGAUCGAUUGAAGAACGAUUGAUGGCCAUGCAAAGCAAGUUGGCAUACGCACUGAAUGAGCUGCAGACCAUAAUGGGCAACCAGAGCGUGG ......................((((....))))(((((.....))))).....((((((....................(((((.....))))).......(((....)))..)))))) (-20.08 = -20.45 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:31 2006