| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,254,070 – 9,254,173 |
| Length | 103 |
| Max. P | 0.754242 |
| Location | 9,254,070 – 9,254,173 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 74.89 |
| Mean single sequence MFE | -24.74 |
| Consensus MFE | -10.18 |
| Energy contribution | -10.90 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9254070 103 - 22407834 AGCAGUGGGAUUGAUGCGAAUGCGAA--AA-UAAUAAAUUAAGUUAUUUUCAUUUUGCAUCUCGGCAAUUUACCGACAGCUUUUAAUAAAGUUAUGAG------------CCUACUGU .((((((((...((((((((...(((--((-((((.......)))))))))..))))))))((((.......)))).((((((....)))))).....------------)))))))) ( -33.40) >DroSec_CAF1 84038 103 - 1 AGCAGUGGGAUUAAUGCGAAUGCGAA--AA-AAAUUAAUCAAGUUAUUUUCAUUUUGCAUCUCUGCAAUUCACCGUCAGCUUUUAAUAAAGUUAUGAG------------CCUAUUGU .((((((((.....((((((((((((--(.-(((.((((...)))).)))..)))))))).)).)))......(((.((((((....)))))))))..------------)))))))) ( -23.10) >DroSim_CAF1 85933 104 - 1 AGCAGUGGGAUUAAUGCGAAUGCGAA--AAAAAAUUAAUUAAGUUAUUUUCAUUUUGCAUCUCAGCAAUUAACCGUCAGCUUUUAAUAAAGUUAUGAG------------CCUAUUGU .((((((((.((((((((((((((((--(..(((.((((...)))).)))..)))))))).)).)).))))).(((.((((((....)))))))))..------------)))))))) ( -24.50) >DroEre_CAF1 90924 117 - 1 AGCAGUGGGU-UGACGCGAAUGAAUAAACAUAAUUCAAGCAAGCUAUUUUCAUUUCGCAUCUAUGCAUUUUACCGCCAGCCUUUAAUAAACCUAUGAGCAAUUAUUUGUUCCUUUUGU .(((((((((-(((.((((((((((.......)))))((....))........))))).))...((........))............)))))))((((((....))))))....))) ( -20.90) >DroYak_CAF1 91310 112 - 1 AGCAGUGGGUGUAAAGAGUGUGCAUUCAAAAAAAUCAAGCAAGUUAUUUUCAAUCCGCGUCAUUGCAAUUUGCCGCCCGCUUUUAAUAAAGUUAUAUCAAA------GUUACCUUUGU ...((((((((....((((....))))...........(((((((...........(((....))))))))))))))))))................((((------(....))))). ( -21.80) >consensus AGCAGUGGGAUUAAUGCGAAUGCGAA__AA_AAAUCAAUCAAGUUAUUUUCAUUUUGCAUCUCUGCAAUUUACCGCCAGCUUUUAAUAAAGUUAUGAG____________CCUAUUGU .((((((((...............................................((......))...........((((((....)))))).................)))))))) (-10.18 = -10.90 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:30 2006