Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 958,313 – 958,407 |
Length | 94 |
Max. P | 0.809332 |
Location | 958,313 – 958,407 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 72.94 |
Mean single sequence MFE | -16.95 |
Consensus MFE | -9.92 |
Energy contribution | -9.90 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.40 |
Mean z-score | -1.55 |
Structure conservation index | 0.59 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 958313 94 + 22407834 CCCAC-----CAAUCCGCCACCACUCCC--CCACCAAUGAGCCCAAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGAAGACGAAGACGGAG .....-----.............((((.--.......((.((....)).))............(((....((((((((...-.))))))))....))))))) ( -16.80) >DroGri_CAF1 108200 85 + 1 CUCC-----UUAAGU----------UCCC-CC-CGGCCGCAACCAAGUACAAACACAAUCAGUGUCAAAAUUUUCGACCGAAAGUCGAAAGCAAUGGCGAAG ....-----......----------....-..-..((((.............((((.....)))).....(((((((.(....))))))))...)))).... ( -15.70) >DroSec_CAF1 86922 93 + 1 CCCAC-----CAAUCCGCCACCACUCC---CCUCAAAUGAGCCCCAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGAAGGCGAAGACGGAG .....-----.............((((---.(((....)))......................(((....((((((((...-.))))))))....))))))) ( -16.30) >DroSim_CAF1 88207 90 + 1 CCCAC-----CAAUCCGCCACCACUCCCCCCCUCAAAUGAGCCCCAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGA------AGACGGAG .....-----...((((..............(((....))).............................((((((((...-.)))))------))))))). ( -14.30) >DroEre_CAF1 92012 75 + 1 CUCCC-----------------CCUGC---CCACAAAUGAGCCCGAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGAAGA------CGGAG ((((.-----------------.(((.---.......((.((....)).))...(((.....))))))..((((((((...-.))))))))------.)))) ( -13.70) >DroYak_CAF1 90008 98 + 1 CCCCCAUCUCCACUCUGGUGCUCCUCG---CCUCAAAUGAGCCCAAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA-AGUCGAAGACCCAGACGGAG .......((((......(((((....(---(.((....))))...))))).............(((.(..((((((((...-.))))))))..).))))))) ( -24.90) >consensus CCCAC_____CAAUCCGCCACCACUCC___CCUCAAAUGAGCCCAAGCACAAACACAAUCAAUGUCAGAAUUUUCGACCCA_AGUCGAAGAC_AAGACGGAG .((.....................................((....))...............(((....((((((((.....))))))))....))))).. ( -9.92 = -9.90 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:01 2006