Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,247,996 – 9,248,089 |
Length | 93 |
Max. P | 0.770075 |
Location | 9,247,996 – 9,248,089 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 77.03 |
Mean single sequence MFE | -18.98 |
Consensus MFE | -9.62 |
Energy contribution | -12.27 |
Covariance contribution | 2.64 |
Combinations/Pair | 1.14 |
Mean z-score | -2.00 |
Structure conservation index | 0.51 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9247996 93 - 22407834 UAAAUAUUAUUUGCAU-UAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU-AAUUCCUAGUAUACUCCAUGAAGUUUAUACCAUUUGUAAAUAU-------C .......((((((((.-..(((.....(((((((((.(((.((((..(..-....)..)))))))..)))))))))...)))...)))))))).-------. ( -21.60) >DroPse_CAF1 95255 99 - 1 UAAAUAUUUCAUGUCAAAGAGUUAGAUAGCGUUUAGAGUU---UUAAGAGAUAUUUCUGUUUUUCUCCAUGAUGUUUAUACCGUUUGUAAAUAUUCUGUAUU ..(((((((.....((((..((.....((((((..(((..---..((.(((....))).))...)))...))))))...))..)))).)))))))....... ( -12.40) >DroSec_CAF1 77831 93 - 1 UAAAUAUUAUUUGCAU-UAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU-AAUUCCUAGUAUACUCCAUGAAGUUAAUGCCAUUUGUAAAUAU-------C .......((((((((.-..(((..((((((((((((.(((.((((..(..-....)..)))))))..)))))))))))))))...)))))))).-------. ( -25.00) >DroSim_CAF1 79683 93 - 1 UAAAUAUUAUUUGCAU-UAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU-AAUUCCUAGUAUACUCCAUGAAGUUUAUACCAUUUGUAAAUAU-------C .......((((((((.-..(((.....(((((((((.(((.((((..(..-....)..)))))))..)))))))))...)))...)))))))).-------. ( -21.60) >DroEre_CAF1 84776 94 - 1 UAAAUAUUAUUUGCAUUUAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU-AAUUCCUAGUAUACUCCAUGAAGUUUAUACCACUUGUAAAUAU-------U .......((((((((....(((.....(((((((((.(((.((((..(..-....)..)))))))..)))))))))...)))...)))))))).-------. ( -20.90) >DroPer_CAF1 95379 99 - 1 UAAAUAUUUCAUGUCAAAGAGUUAGAUAGCGUUUAGAGUU---UUAAGAGAUAUUUCUGUUUUUCUCCAUGAUGUUUAUACCGUUUGUAAAUAUUCUGUAUU ..(((((((.....((((..((.....((((((..(((..---..((.(((....))).))...)))...))))))...))..)))).)))))))....... ( -12.40) >consensus UAAAUAUUAUUUGCAU_UAGGUUAGUUAGCUUUAUGUGUAGUACUUAGUU_AAUUCCUAGUAUACUCCAUGAAGUUUAUACCAUUUGUAAAUAU_______C .......((((((((....(((.....(((((((((.(..(((((.((........)))))))...))))))))))...)))...))))))))......... ( -9.62 = -12.27 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:27 2006