Locus 3227

Sequence ID 2L_DroMel_CAF1
Location 9,245,579 – 9,245,681
Length 102
Max. P 0.985456
window5126 window5127

overview

Window 6

Location 9,245,579 – 9,245,681
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.37
Mean single sequence MFE -41.82
Consensus MFE -27.44
Energy contribution -27.39
Covariance contribution -0.05
Combinations/Pair 1.21
Mean z-score -3.02
Structure conservation index 0.66
SVM decision value 2.01
SVM RNA-class probability 0.985456
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9245579 102 + 22407834
GGCGGUGGCAUUGUGGGCGGAGUCAACAGUACAAACACAAUGGGCAAUGUCACGCCCACGGGCAGCGGCAAUGUCAGCAACUCCAUGCUCAACACGCCACCG
..(((((((....((((((((((.....((....))......((((.((((.((((....))).).)))).))))....)))))..)))))....))))))) ( -40.80)
>DroPse_CAF1 92574 99 + 1
GGCGGCGGCAUUGUCGGUGGCCCCAAUAGUACAAAUGCCAUGGGCAAUGUCACGCCCACGGGCAG---UAAUGUCGGCAACCCUAUGCUCAAUACGCCGCCG
(((((((((((((((.(((((...............))))).)))))))))..(((....))).(---((.((..((((......)))))).))))))))). ( -46.76)
>DroWil_CAF1 135838 96 + 1
GGUGGCGGC------GGCAGCGGAAAUAGUACAAAUAUCAUGGGCAAUGCCACGCCCACGGGAAGCGGCAAUGGCAAUAAUGCAAUGCUCAAUACGCCACCA
(((((((((------....))...................((((((.((((.(.((....))..).))))...(((....)))..))))))...))))))). ( -35.70)
>DroYak_CAF1 81692 102 + 1
GGCGGCGGUAUCGUGGGCGGGGUCAACAGUACAAACACCAUGGGCAACGUCACGCCCACGGGCAGCGGCAAUGUCAGCAACUCCAUGCUCAACACGCCGCCA
(((((((((...(((((((.(((.............)))...(....)....)))))))(((((..((...((....))...)).))))).)).))))))). ( -43.92)
>DroMoj_CAF1 134894 93 + 1
GGCGGCGGU---------AGCGGCAAUAGUACAAAUUCCAUGGGCAAUGCCACGCCCACCGGCAGCGGCAGCAGCGGUAAUCCAAUGCUCAAUACGCCGCCA
(((((((..---------...((.(((.......))))).((((((.((((.((((....))).).)))).....((....))..))))))...))))))). ( -37.00)
>DroPer_CAF1 92698 99 + 1
GGCGGCGGCAUUGUCGGUGGCCCCAAUAGUACAAAUGCCAUGGGCAAUGUCACGCCCACGGGCAG---UAAUGUCGGCAACCCUAUGCUCAAUACGCCGCCG
(((((((((((((((.(((((...............))))).)))))))))..(((....))).(---((.((..((((......)))))).))))))))). ( -46.76)
>consensus
GGCGGCGGCAUUGU_GGCGGCGCCAAUAGUACAAAUACCAUGGGCAAUGUCACGCCCACGGGCAGCGGCAAUGUCAGCAACCCAAUGCUCAAUACGCCGCCA
(((((((.................................(((((........))))).(((((.......((....))......)))))....))))))). (-27.44 = -27.39 +  -0.05)

alignment

Postscript

secondary structure

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dotplot

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Window 7

Location 9,245,579 – 9,245,681
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.37
Mean single sequence MFE -41.27
Consensus MFE -27.71
Energy contribution -29.13
Covariance contribution 1.42
Combinations/Pair 1.25
Mean z-score -1.96
Structure conservation index 0.67
SVM decision value 1.18
SVM RNA-class probability 0.927684
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9245579 102 - 22407834
CGGUGGCGUGUUGAGCAUGGAGUUGCUGACAUUGCCGCUGCCCGUGGGCGUGACAUUGCCCAUUGUGUUUGUACUGUUGACUCCGCCCACAAUGCCACCGCC
(((((((((..((.((..((((((...((((.(((....(((.(((((((......))))))).).))..))).)))))))))))).))..))))))))).. ( -42.90)
>DroPse_CAF1 92574 99 - 1
CGGCGGCGUAUUGAGCAUAGGGUUGCCGACAUUA---CUGCCCGUGGGCGUGACAUUGCCCAUGGCAUUUGUACUAUUGGGGCCACCGACAAUGCCGCCGCC
.((((((((((((.......((((.((((.(.((---(((((.(((((((......)))))))))))...))).).)))))))).....))))).))))))) ( -43.10)
>DroWil_CAF1 135838 96 - 1
UGGUGGCGUAUUGAGCAUUGCAUUAUUGCCAUUGCCGCUUCCCGUGGGCGUGGCAUUGCCCAUGAUAUUUGUACUAUUUCCGCUGCC------GCCGCCACC
((((((((....(.(((..(((....)))...))))......((((((((......))))))))......................)------))))))).. ( -33.50)
>DroYak_CAF1 81692 102 - 1
UGGCGGCGUGUUGAGCAUGGAGUUGCUGACAUUGCCGCUGCCCGUGGGCGUGACGUUGCCCAUGGUGUUUGUACUGUUGACCCCGCCCACGAUACCGCCGCC
.((((((((((((.(..(((.(((...((((.(((....(((((((((((......))))))))).))..))).))))))).)))..).))))).))))))) ( -45.10)
>DroMoj_CAF1 134894 93 - 1
UGGCGGCGUAUUGAGCAUUGGAUUACCGCUGCUGCCGCUGCCGGUGGGCGUGGCAUUGCCCAUGGAAUUUGUACUAUUGCCGCU---------ACCGCCGCC
.(((((((.....((((.(((....))).))))..)))))))(((((..((((((..(..((.......))..)...)))))).---------.)))))... ( -39.90)
>DroPer_CAF1 92698 99 - 1
CGGCGGCGUAUUGAGCAUAGGGUUGCCGACAUUA---CUGCCCGUGGGCGUGACAUUGCCCAUGGCAUUUGUACUAUUGGGGCCACCGACAAUGCCGCCGCC
.((((((((((((.......((((.((((.(.((---(((((.(((((((......)))))))))))...))).).)))))))).....))))).))))))) ( -43.10)
>consensus
CGGCGGCGUAUUGAGCAUAGGGUUGCCGACAUUGCCGCUGCCCGUGGGCGUGACAUUGCCCAUGGUAUUUGUACUAUUGACGCCGCC_ACAAUGCCGCCGCC
.((((((((((((.(((......)))...............(((((((((......)))))))))........................))))).))))))) (-27.71 = -29.13 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:26 2006