Locus 3226

Sequence ID 2L_DroMel_CAF1
Location 9,242,821 – 9,242,940
Length 119
Max. P 0.506143
window5125

overview

Window 5

Location 9,242,821 – 9,242,940
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 83.54
Mean single sequence MFE -35.80
Consensus MFE -24.49
Energy contribution -24.18
Covariance contribution -0.31
Combinations/Pair 1.29
Mean z-score -1.49
Structure conservation index 0.68
SVM decision value -0.05
SVM RNA-class probability 0.506143
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9242821 119 - 22407834
CCAAUACUCACUCGCAUUCUCCGGAACGAGCAAUUGUUGCUUUUGCUGUUGCUGCAAUAAACGCUCCUUCUGUUGUGCGGCCGCCAACUGCUGCUGUUGUCGUAUGUUUCGCAGUUGCU
...........((((((....(((((.((((..(((((((....((....)).)))))))..)))).)))))..))))))..((.((((((.((...........))...)))))))). ( -35.80)
>DroSec_CAF1 72705 116 - 1
CCAAUACUCACUCGCAUUCUCAGGAACAAGCAAUUGCUGCUUUUGCUGUUGCUGCAAUAAACGCUCCUUCUGCUGUGCGGCCGCCAAGUG---CUGUUGCCGCAUGUUCCGCAGUUGCU
.............(((..((..(((((.((((((.((.......)).)))))).........((.......)).(((((((.((......---..)).))))))))))))..)).))). ( -33.40)
>DroSim_CAF1 74544 116 - 1
CCAAUACUCACUCGCAUUCUCAGGAACAAGCAAUUGCUGCUUUUGCUGUUGCUGCAAUAAACGCUCCUUCUGCUGUGCGGCCGCCAAAUG---CUGUUGCCGCAUGUUCCGCAGUUGCU
.............(((..((..(((((.((((((.((.......)).)))))).........((.......)).(((((((.((......---..)).))))))))))))..)).))). ( -33.40)
>DroWil_CAF1 131954 119 - 1
CCCAUACUCACUGGCAUUCUCGGGCACAAGCAUCUGUUGCUUCUGUUGCUGUUGCAGAAGGCGCUCUUUUUGCUGGGCAGCAGCCAGUUGCUGUUGCUGUCGCAAAUUGCGCAAUUGCU
.........((((((.......((((.(((((.....))))).))))(((((.((((((((....))))))))...))))).)))))).((.(((((....((.....))))))).)). ( -40.60)
>consensus
CCAAUACUCACUCGCAUUCUCAGGAACAAGCAAUUGCUGCUUUUGCUGUUGCUGCAAUAAACGCUCCUUCUGCUGUGCGGCCGCCAAAUG___CUGUUGCCGCAUGUUCCGCAGUUGCU
............................(((((((((.((.((((.(((....))).)))).)).........((((((((.((...........)).))))))))....))))))))) (-24.49 = -24.18 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:25 2006