| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,237,394 – 9,237,494 |
| Length | 100 |
| Max. P | 0.973240 |
| Location | 9,237,394 – 9,237,494 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 85.14 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -19.83 |
| Energy contribution | -20.25 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.29 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.973240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9237394 100 - 22407834 U-------UCGGGGUGAAGGCACUCCGAAAGAAUAUCAGUCAAAUGAUUAAGUAAACAUCAGAAUAACAACAACAAUGAGAGCAACGGUAGCAGUUGCAAAAAAUA-A- (-------((((((((....))))))))).....((((......)))).................................(((((.......)))))........-.- ( -20.80) >DroSec_CAF1 67284 96 - 1 A-------UCGGGGUGAAGGCACUCCGAAU-AAUAUCAGUCAAAUGAUUAAGUAAACAUCAGAAUAACAACAACAAUGAGAGCAACGGUAGCCGUUGCAAAAAA----- .-------((((((((....))))))))..-...((((......)))).................................(((((((...)))))))......----- ( -23.90) >DroSim_CAF1 69137 96 - 1 A-------UCGGGGUGAAGGCACUCCGAAA-AAUAUCAGUCAAAUGAUUAAGUAAACAUCAGAAUAACAACAACAAUGAGAGCAACGGUAGCCGUUGCAAAAAA----- .-------((((((((....))))))))..-...((((......)))).................................(((((((...)))))))......----- ( -23.90) >DroEre_CAF1 74254 101 - 1 U-------UCGGGGUGAAGGCACUCCGAAA-AAUAUCAGUCAAAUGAUUAAGUAAACAUCGCAAUAACAACAACAAUGAGAGCAACGGUAGCCGUUGCAAAUAAAUGAA (-------((((((((....))))))))).-....((((((....))))................................(((((((...)))))))........)). ( -24.60) >DroYak_CAF1 73305 100 - 1 U-------UCGGGGUGAAGGCACUCCGAAA-AAUAUCAGUCAAAUGAUUAAGUAAACAUCGCAAUAACAACAACAAUGAGAGCAACGGUAGCCGUUGCAAAAAAAA-AC (-------((((((((....))))))))).-...((((......)))).................................(((((((...)))))))........-.. ( -24.50) >DroAna_CAF1 66914 95 - 1 ACUGGGGAUUGGGGUGAAGGCACUCCGAA--AAUAUCAGUCAAAUGAUAAAGUAAACA---------CAACAACAAAGCAGCCAACGGUAGCUGCUACAACAAUA--A- ..((..(.((((((((....)))))))).--..(((((......))))).........---------)..))....((((((........)))))).........--.- ( -23.50) >consensus A_______UCGGGGUGAAGGCACUCCGAAA_AAUAUCAGUCAAAUGAUUAAGUAAACAUCAGAAUAACAACAACAAUGAGAGCAACGGUAGCCGUUGCAAAAAAA__A_ ........((((((((....))))))))......((((......)))).................................(((((((...)))))))........... (-19.83 = -20.25 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:22 2006