| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,212,665 – 9,212,757 |
| Length | 92 |
| Max. P | 0.946955 |
| Location | 9,212,665 – 9,212,757 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.57 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -11.28 |
| Energy contribution | -12.28 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.946955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9212665 92 - 22407834 ----UAGGCACACA--UACUCUCACUUUUCCACUGGGAA---------AAUCCAGCUUAGCAUGGCUGCUCCAUCUGUCUCCAUCACC------------AUUUCCACUGGUGUCGCCA ----..(((..(((--.........((((((....))))---------))..(((((......))))).......)))......((((------------(.......)))))..))). ( -20.80) >DroSec_CAF1 47735 92 - 1 ----UAGGCACAUAC-UACUCUCACUUUUCCACUGGGA----------GAUCCAGCUUAGCAUGCCAGCUCCAUCUGUCUCCAUCACC------------AUUUCCACUGGUGUCGCCA ----..(((......-...................(((----------((..(((...(((......)))....))))))))..((((------------(.......)))))..))). ( -21.80) >DroSim_CAF1 49550 92 - 1 ----UAGGCACAUAC-UACUCUCACUUUUCCACUGGGA----------GAUCCAGCUUAGCAUGCCAGCUCCAUCUGUCUCCAUCACC------------AUUUCCACUGGUGUCGCCA ----..(((......-...................(((----------((..(((...(((......)))....))))))))..((((------------(.......)))))..))). ( -21.80) >DroEre_CAF1 53741 101 - 1 ----UAGGCACACAC--ACUCUCACUUUUCCACUGGGAUCCA------------ACUUAGCAUUGCUGCUCCAUCUGUCUCCAUCACCAUCACCAUCAGCAUUUCCACUGGUGUCGCCA ----..(((((((..--..................(((..((------------....((((....)))).....))..)))..............(((........))))))).))). ( -18.50) >DroYak_CAF1 52566 103 - 1 ----UAGGCACACACAUACUCUCACUUUUCCACUGGGAUCCAGAUUUGGAUACAGCUCAGCAUAGCUGCUCCAUCUGUCUCCAUCACC------------AUUUCCACUGGUGUCGCCA ----..(((..........................(((..((((..((((..(((((......))))).))))))))..)))..((((------------(.......)))))..))). ( -29.20) >DroAna_CAF1 49567 97 - 1 AAGCUCGGCACACA--UACUCUCACUUUUCCGCUGGGAUCCAGAACCAGAUCCAGCUU--------AGCUCCAUCUGUCUCCAUCACC------------GUUUCCAUUCUUGUCGCCA ......((((((..--...((((((......).)))))....((..(((((..(((..--------.)))..)))))..)).......------------...........))).))). ( -17.00) >consensus ____UAGGCACACAC_UACUCUCACUUUUCCACUGGGAU_________GAUCCAGCUUAGCAUGGCAGCUCCAUCUGUCUCCAUCACC____________AUUUCCACUGGUGUCGCCA ......(((((((......(((((.........)))))..............(((...(((......)))....))).................................)))).))). (-11.28 = -12.28 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:16 2006