Locus 3220

Sequence ID 2L_DroMel_CAF1
Location 9,211,678 – 9,211,786
Length 108
Max. P 0.688500
window5115

overview

Window 5

Location 9,211,678 – 9,211,786
Length 108
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 87.77
Mean single sequence MFE -18.45
Consensus MFE -15.93
Energy contribution -15.93
Covariance contribution -0.00
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 0.86
SVM decision value 0.32
SVM RNA-class probability 0.688500
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9211678 108 + 22407834
GGGCGUAAAUGUAUGCAAAUAAAAUGCGUGUGCGAGACUUUUGAAGUGGGUUAAUAUUAAAACAACAAAAGCAAACCUAAAGAAAACCCCUUCGUACCAAAAAAA--UAA
((.((((.((((((.........)))))).))))........((((.(((((................................)))))))))...)).......--... ( -19.15)
>DroSec_CAF1 46754 108 + 1
GGGCGUAAAUGUAUGCAAAUAAAAUGCGUGUGCGAGACUUUUGAAGUGGGUUAAUAUUAAAACAACAAAAGCAAACCCAAAGAAAACCCCUUCGUACCAAAAAAA--UAA
((.((((.((((((.........)))))).))))........((((.(((((................................)))))))))...)).......--... ( -19.15)
>DroYak_CAF1 51679 110 + 1
GGGCGUAAAUGUAUGCAAAUAAAAUGCGUGUGCGAGACUUUUGAAGUGGGUUAAUAUUAAAACAACAAAAGCAAACCCAAAGAAAACCUCUCCGAUCCACAAAAAAAGAA
(((((((.((((((.........)))))).)))((((..(((....((((((.....................))))))....)))..)))).).)))............ ( -19.90)
>DroAna_CAF1 48792 96 + 1
GUGCGUAAAUGUAUGCAAAUAAAAUGCGUGUGCGAGACUUUUGAAGUGGGUUAAUAUUAAAACAACAAAAGCGAGC-UAAAGAAUAC-----------AAAAAAA--CGG
...(((.....((((((.......)))))).((..(.((((((...((..(((....)))..)).)))))))..))-..........-----------......)--)). ( -15.60)
>consensus
GGGCGUAAAUGUAUGCAAAUAAAAUGCGUGUGCGAGACUUUUGAAGUGGGUUAAUAUUAAAACAACAAAAGCAAACCCAAAGAAAACCCCUUCGUACCAAAAAAA__UAA
(((((((.((((((.........)))))).)))).(.((((((...((..(((....)))..)).)))))))...)))................................ (-15.93 = -15.93 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:15 2006