Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 943,597 – 943,690 |
Length | 93 |
Max. P | 0.959155 |
Location | 943,597 – 943,690 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 87.46 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -26.55 |
Energy contribution | -26.47 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -2.29 |
Structure conservation index | 0.88 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 943597 93 - 22407834 AGUAGGAGCUGCCAAACAAUUUUUGAAGUGCGUUUGGCGCUCAUUGAAGUUUGUGUGGCUUUCAGCGCUGCUGUGCAAACUUGAUUAUUUCUG---- .....((((.(((((((.(((.....)))..)))))))))))..(.(((((((((..((..........))..))))))))).).........---- ( -30.30) >DroPse_CAF1 73701 94 - 1 AGAGGAAACUGCCAAACAAUUUGUGAAGUGCGUUUUGCGCACAUUGAAGUUUGUGUGGCUUUCAGCGCU---GCGCAAAGUUGAUUAUUUCCAACCA ...(((((..(.(((....((((((.(((((.....((.(((((........))))))).....)))))---.)))))).))).)..)))))..... ( -28.40) >DroSim_CAF1 72382 93 - 1 AGCAGGAGCUGCCAAACAAUUUUUGAAGUGCGUUUGGCGCACAUUGAAGUUUGUGUGGCUUUCAGCGCUGCUGUGCAAACUUGAUUAUUUCUG---- (((((..(((((((.((((.(((..(.(((((.....))))).)..))).)))).))))....))).))))).....................---- ( -31.10) >DroEre_CAF1 78323 93 - 1 AGUGGGAGCUGCCAAGCAAUUUUUGAAGUGCGUUUGCGGCACAUUGAAGUUUGUGUGGCUUUCAGCGCUGCUGCGCAAACUUGAUUAUUGCCG---- ..((..(((..((((((....((..(.((((.......)))).)..))))))).)..)))..))((((....)))).................---- ( -31.10) >DroYak_CAF1 74878 93 - 1 AGUGGGAGCUGGCAAACAAUUUUUGAAGUGCGUUUGCCGCACAUUCAAGUUUGUGUGGCUUUCAGCGCUGCUGUGCAAACUUGAUUAUUUCUG---- ...((((((.(((((((.(((.....)))..)))))))))....(((((((((((..((..........))..)))))))))))....)))).---- ( -31.30) >DroPer_CAF1 73706 94 - 1 AGAGGAAACUGCCAAACAAUUUGUGAAGUGCGUUUUGCGCACAUUGAAGUUUGUGUGGCUUUCAGCGCU---GCGCAAAGUUGAUUAUUUCCAACCA ...(((((..(.(((....((((((.(((((.....((.(((((........))))))).....)))))---.)))))).))).)..)))))..... ( -28.40) >consensus AGUGGGAGCUGCCAAACAAUUUUUGAAGUGCGUUUGGCGCACAUUGAAGUUUGUGUGGCUUUCAGCGCUGCUGCGCAAACUUGAUUAUUUCCG____ ...(((((..((((.((((.((((((.(((((.....))))).)))))).)))).)))).....((((....))))...........)))))..... (-26.55 = -26.47 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:00 2006