Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,210,754 – 9,210,847 |
Length | 93 |
Max. P | 0.817129 |
Location | 9,210,754 – 9,210,847 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 87.04 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -20.66 |
Energy contribution | -21.23 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.13 |
Mean z-score | -2.06 |
Structure conservation index | 0.72 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9210754 93 - 22407834 UACGCAGGGCAUUUAAUUCUAAUUCGCGUGGGUUG-----AGUUCAGUUGAGUUCCCUGUCGGCCGUCAAAUUAAAUGAAAAUUUGUGGUCGACUUUG .....((((.((((((((..(((((((....).))-----)))).)))))))).))))((((((((.((((((.......)))))))))))))).... ( -29.10) >DroSec_CAF1 45780 93 - 1 UACGCAGGGUAUU--AUUCUAAUUCGCGUGGGUUGGG---AGUUCAGUUGAGUUCCCUGCCGGCCGUCAAAUUAAAUGAAAAUUUGUGGUCGACUUUG ...((((((.(((--...(((((((.((.....)).)---)))).))...))).))))))((((((.((((((.......))))))))))))...... ( -30.50) >DroSim_CAF1 47603 93 - 1 UACGCAGGGUAUU--AUUCUAAUUCGCGUGCGUUGGG---AGUUCAGUUGUGUCCCCUGCCGGCCGUCAAAUUAAAUGAAAAUUUGUGGUCGACUUUG ...((((((.((.--...(((((((.((.....)).)---)))).))....)).))))))((((((.((((((.......))))))))))))...... ( -29.20) >DroEre_CAF1 51645 91 - 1 UACGCAGGGUAUU--AUUGCGAGUCGCGUGGC-----UUAAGUUAAGUUGAGUUCUCUGCCGGCCGUCAAAUUAAAUGAAAAUUUGCGGUCGACUUUA ...((((((....--...(((...)))..(((-----((((......)))))))))))))((((((.((((((.......))))))))))))...... ( -26.70) >consensus UACGCAGGGUAUU__AUUCUAAUUCGCGUGGGUUG_____AGUUCAGUUGAGUUCCCUGCCGGCCGUCAAAUUAAAUGAAAAUUUGUGGUCGACUUUG ...((((((.((...((((((((((....))))))).........)))...)).))))))((((((.((((((.......))))))))))))...... (-20.66 = -21.23 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:14 2006