| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,199,522 – 9,199,621 |
| Length | 99 |
| Max. P | 0.865424 |
| Location | 9,199,522 – 9,199,621 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 87.40 |
| Mean single sequence MFE | -18.78 |
| Consensus MFE | -15.02 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9199522 99 + 22407834 CGCUUAC---AAAUUGAAGGCUGGAAUAAACCAGUCGAUGUUCUCAUUAUAAGCAGUAUUAAUUAGAGUUU--UUUCAGAACCGAAUCAUAAACUAAAAAAAAA .(((((.---........((((((......))))))((((....)))).)))))............(((((--.(((......)))....)))))......... ( -18.20) >DroSec_CAF1 35177 99 + 1 CGCUUAA---UAAUUGAAGGCUGGAACAAACCAGUCGAUGUUCUCAUUAUAAACAGUAUUAAUUAGUGUUUU-UUUCAGAACCAAAUCAUAAACUAAAA-AAAA .......---........((((((......))))))((((((((......(((((.((.....)).))))).-....)))))...)))...........-.... ( -18.00) >DroSim_CAF1 36459 101 + 1 CGCUUAA---UAAUUGAAGGCUGGAACAAACCAGUCGAUGUUCUCAUUAAAAGCAGUAUUAAUUAGUGUUUUUUUUCAGAACCAAAUCAUAAACUAAAAAAAAA .......---........((((((......))))))((((((((.(..(((((((.((.....)).)))))))..).)))))...)))................ ( -21.10) >DroEre_CAF1 39519 99 + 1 -GUUGAAUUUGAAUUGAAGGCUGGAACAAACCAGUCGAUGUUCUCAAUAUUAGCAGGAUUAAUUAGUGUUUU---UCAGAACCCAAUUAUUAACUACAA-AAAA -(((((.....(((((..((((((......))))))...(((((.((((((((.........))))))))..---..))))).))))).))))).....-.... ( -17.80) >consensus CGCUUAA___UAAUUGAAGGCUGGAACAAACCAGUCGAUGUUCUCAUUAUAAGCAGUAUUAAUUAGUGUUUU_UUUCAGAACCAAAUCAUAAACUAAAA_AAAA ..................((((((......))))))((((((((......(((((.((.....)).)))))......)))))...)))................ (-15.02 = -15.40 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:11 2006