Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,195,294 – 9,195,387 |
Length | 93 |
Max. P | 0.991416 |
Location | 9,195,294 – 9,195,387 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -23.84 |
Consensus MFE | -20.10 |
Energy contribution | -20.34 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.18 |
Structure conservation index | 0.84 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9195294 93 + 22407834 UAUAAAGACCCUCACUGGGUUGUCUUUGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACUUGAGGCUUGAGGAAAAUUCCUAACACACAA .........(((((...((((((((((((.......(((......))).))))..)))))))))))))....((((....))))......... ( -22.00) >DroSec_CAF1 31085 89 + 1 UAUAAAGACCCUCACUGGGUUGUCU-UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU---GGCUUGAGGAAAAUUCCUAACACACAA ......(((((.....)))))((.(-((...(((((((((..((..(.(((......))).).---.))..).))))))))..))).)).... ( -24.10) >DroSim_CAF1 32383 89 + 1 UAUAAAGACCCUCACUGGGUUGUCU-UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU---GGCUUGAGGAAAAUUCCUAACACACAA ......(((((.....)))))((.(-((...(((((((((..((..(.(((......))).).---.))..).))))))))..))).)).... ( -24.10) >DroEre_CAF1 35273 87 + 1 UAUAAAGAGGCUCUCUGGGUCGCCU-UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU---GGCUUGAGGAAAAUUCCCAGCA--CAA ......(((((..........))))-)(((.(((((((((..((..(.(((......))).).---.))..).))))))))...))).--... ( -25.30) >DroYak_CAF1 33370 87 + 1 UAUAAAGACCCUCUCUGGGUUGCUU-UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU---GGCUUGAGGAAAAUUCCUAACA--CAA ..(((((((((.....))))..)))-))...(((((((((..((..(.(((......))).).---.))..).)))))))).......--... ( -23.70) >consensus UAUAAAGACCCUCACUGGGUUGUCU_UGCUAAAUUUUCCCUUGUUGGAUGCAAUCAGGCAACU___GGCUUGAGGAAAAUUCCUAACACACAA ......(((((.....)))))..........((((((((.((((.....))))((((((........))))))))))))))............ (-20.10 = -20.34 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:10 2006