Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,193,525 – 9,193,616 |
Length | 91 |
Max. P | 0.564887 |
Location | 9,193,525 – 9,193,616 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 73.39 |
Mean single sequence MFE | -21.17 |
Consensus MFE | -11.83 |
Energy contribution | -12.42 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.15 |
Mean z-score | -1.44 |
Structure conservation index | 0.56 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564887 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9193525 91 + 22407834 AGGCCUAU----------------UUUUUUUUUUGUUUUUUGGUCUAUC-AGUGCAGCAA----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUCUUC--UCAC ((((((((----------------........(((((..((((....))-))...)))))----...(((...((((((........))))))..)))))))))))..--.... ( -16.40) >DroGri_CAF1 55168 94 + 1 CUGCCGUUGAAAUAG---------UUUCAG-UUUCAGUUUCA--GUUUC-AGUUUUUCAACUUGCCAUGAAAUAUGAAACAACUUUAUUUCAUUGUCAGUAGGUC-UA------ (((.((.((((((((---------.....(-(((((((((((--.....-((((....)))).....)))))).))))))....)))))))).)).)))......-..------ ( -20.40) >DroSec_CAF1 29302 94 + 1 AGGCCUAUACAAUAUAUA----C--------UUUUUUUUUUGGUCUGUC-AGUGCAGCAA----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC-UC--UCAC ((((((((..........----.--------.........((((((((.-...))))..)----)))(((...((((((........))))))..))))))))))-).--.... ( -20.50) >DroSim_CAF1 30640 102 + 1 AGGCCUAUACAAUAUAUA----GGUUUUUUUUUUUUUUUUUUGUCUGUC-AGUGCAGCAA----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC-UC--UCAC (((((((((((((....(----((((.((((.((((....(((.((((.-...)))))))----....))))...)))).)))))......)))))..)))))))-).--.... ( -20.10) >DroEre_CAF1 33538 105 + 1 AGGCCUAUAAGAUAUAGAUAUAUGUAUUUGUAA-UUUUUUUGGUCUGCC-AGUGCAGCAA----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC-UC--UCGU ((((((((....((((((((....)))))))).-......((((((((.-...))))..)----)))(((...((((((........))))))..))))))))))-).--.... ( -25.40) >DroAna_CAF1 31127 96 + 1 AGGCCUAUGAAAUAG-------------UUUUUAGCUUUUUCGACUGCCGAGUGCAGCAG----CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC-UCUCUCAC .(((...(((((.((-------------(.....))).)))))...)))(((.(.((.(.----((((((...((((((........))))))..))).))).))-)).))).. ( -24.20) >consensus AGGCCUAUAAAAUAU_________UUUUUUUUUUUUUUUUUGGUCUGUC_AGUGCAGCAA____CCAUGAAAUGUGAAACAACUUUAUUUCAUUGUCAGUGGGUC_UC__UCAC .(((((((....................................((((.....))))..........(((...((((((........))))))..))))))))))......... (-11.83 = -12.42 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:09 2006