Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,191,730 – 9,191,836 |
Length | 106 |
Max. P | 0.777205 |
Location | 9,191,730 – 9,191,836 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 84.17 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -27.24 |
Energy contribution | -27.52 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -1.64 |
Structure conservation index | 0.89 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9191730 106 - 22407834 UAUCCC---CCUCCAUCC-AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCCGCAGCGUUAGAUGUGCCCUUCGUUGUUG------- ......---.........-.(((.....(((((........)))))......(((((((.(((((.((((........)))).))))).))))))).......)))....------- ( -26.90) >DroGri_CAF1 51897 100 - 1 ----------UGCUUUGCAGCACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUUGUUGUAG------- ----------.....(((((........))))).......((((((((((.((((.....)))).((((.((((((...((....))..)))))).))))))))))))))------- ( -36.30) >DroSec_CAF1 27565 105 - 1 UAUCCCC----UCCAUCC-AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCCGCAGCGUUAGAUGUGCCCUUCGUUGUUG------- .......----.......-.(((.....(((((........)))))......(((((((.(((((.((((........)))).))))).))))))).......)))....------- ( -26.90) >DroWil_CAF1 61732 99 - 1 ----------AUAUUGAU-AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUCGUUGUUG------- ----------........-...........(((....((((..(((((((.(....).)))))))((((.((((((...((....))..)))))).)))))))).)))..------- ( -30.60) >DroMoj_CAF1 52079 104 - 1 -----CUUCUUUUUUUGU-ACACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUUGCUGUUG------- -----.............-..................((((.(((((....((((.....)))).((((.((((((...((....))..)))))).))))))))).))))------- ( -30.60) >DroAna_CAF1 29618 110 - 1 --UCCCC----CACUACU-AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUCGUGGUUCUUUUUGC --....(----(((.((.-........................(((((((.(....).)))))))((((.((((((...((....))..)))))).)))))).)))).......... ( -32.00) >consensus _____C_____UCCUUCC_AAACUUACCCUGCAUUUUCGGCUGCAGCAAUUGACAUCUGUUGUUGGGGCUCAUCUGUUAGCUGCAGCGUUAGAUGUGCCCGUCGUUGUUG_______ ..............................(((....((((..(((((((.(....).)))))))((((.((((((...((....))..)))))).)))))))).)))......... (-27.24 = -27.52 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:08 2006