Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,183,829 – 9,183,937 |
Length | 108 |
Max. P | 0.891752 |
Location | 9,183,829 – 9,183,937 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.43 |
Mean single sequence MFE | -23.06 |
Consensus MFE | -17.18 |
Energy contribution | -18.43 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.10 |
Mean z-score | -1.78 |
Structure conservation index | 0.75 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9183829 108 + 22407834 GCCUCAAAGUAUGCAAUUAAUGAUGCGUAUUUUAUUCUAUUUCGCGUCAUUUCAUUUCGAUAUAAUCGAAAUACAGGACGUUGUAUACGCCCUACUAAUCCGCUUUGA ...(((((((........(((((((((...............)))))))))..((((((((...))))))))..(((.(((.....))).)))........))))))) ( -26.26) >DroSec_CAF1 19761 108 + 1 GCCUCAAAGUAUGCAAUUAAUGGUGCGUAUUUUAUUCUAUUUCGCGUCAUUUCAUUUCGAUAUAAUCGGAAUACAGGACGUUGUAUACGCCCUACUAAUCCGCUUUGA ...(((((((.....((((.(((.((((((.............(((((.....((((((((...))))))))....)))))...)))))).))).))))..))))))) ( -24.79) >DroSim_CAF1 20620 108 + 1 GCCUCAAAGUAUGCAAUUAAUGGUGCGUAUUUUAUUCUAUUUCGCGUCAUUUCAUUUCGAUAAAAUCGCAAUGCAGGACGUUGUAUACGCCCUACUAAUCCGCUUUGA ...(((((((.....((((.(((.((((((.............(((((....((((.((((...)))).))))...)))))...)))))).))).))))..))))))) ( -23.89) >DroYak_CAF1 21698 96 + 1 GCCUCAAAGUAUGCAAUUAAUGGUGCGCAUUUUAUUCUAUUUCGUGUCAUUUCAUUUCGAUAUAAUCGAAAUA------------CACGCCCUAAUAAUCCGCUUUGA ...(((((((..(((........)))................(((((......((((((((...)))))))))------------))))............))))))) ( -17.30) >consensus GCCUCAAAGUAUGCAAUUAAUGGUGCGUAUUUUAUUCUAUUUCGCGUCAUUUCAUUUCGAUAUAAUCGAAAUACAGGACGUUGUAUACGCCCUACUAAUCCGCUUUGA ...(((((((........(((((((((...............)))))))))..((((((((...))))))))..(((.(((.....))).)))........))))))) (-17.18 = -18.43 + 1.25)
Location | 9,183,829 – 9,183,937 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 90.43 |
Mean single sequence MFE | -25.21 |
Consensus MFE | -21.10 |
Energy contribution | -22.35 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.97 |
Structure conservation index | 0.84 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9183829 108 - 22407834 UCAAAGCGGAUUAGUAGGGCGUAUACAACGUCCUGUAUUUCGAUUAUAUCGAAAUGAAAUGACGCGAAAUAGAAUAAAAUACGCAUCAUUAAUUGCAUACUUUGAGGC ((((((........((((((((.....))))))))(((((((((...))))))))).(((((.(((...............))).))))).........))))))... ( -27.16) >DroSec_CAF1 19761 108 - 1 UCAAAGCGGAUUAGUAGGGCGUAUACAACGUCCUGUAUUCCGAUUAUAUCGAAAUGAAAUGACGCGAAAUAGAAUAAAAUACGCACCAUUAAUUGCAUACUUUGAGGC ((((((((((.((.((((((((.....)))))))))).))))...............((((..(((...............)))..)))).........))))))... ( -25.46) >DroSim_CAF1 20620 108 - 1 UCAAAGCGGAUUAGUAGGGCGUAUACAACGUCCUGCAUUGCGAUUUUAUCGAAAUGAAAUGACGCGAAAUAGAAUAAAAUACGCACCAUUAAUUGCAUACUUUGAGGC ((((((.......(((((((((.....))))))))).((((((((((((....)))))))..)))))...............(((........)))...))))))... ( -27.70) >DroYak_CAF1 21698 96 - 1 UCAAAGCGGAUUAUUAGGGCGUG------------UAUUUCGAUUAUAUCGAAAUGAAAUGACACGAAAUAGAAUAAAAUGCGCACCAUUAAUUGCAUACUUUGAGGC ((((((((..(((((..(.((((------------(((((((((...))))))))......)))))...)..)))))..)))(((........)))....)))))... ( -20.50) >consensus UCAAAGCGGAUUAGUAGGGCGUAUACAACGUCCUGUAUUUCGAUUAUAUCGAAAUGAAAUGACGCGAAAUAGAAUAAAAUACGCACCAUUAAUUGCAUACUUUGAGGC ((((((..(((((((.((((((((....((((...(((((((((...)))))))))....))))(......)......)))))).))))))))).....))))))... (-21.10 = -22.35 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:03 2006