Locus 321

Sequence ID 2L_DroMel_CAF1
Location 918,381 – 918,471
Length 90
Max. P 0.682898
window513

overview

Window 3

Location 918,381 – 918,471
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 71.35
Mean single sequence MFE -17.16
Consensus MFE -8.32
Energy contribution -9.76
Covariance contribution 1.44
Combinations/Pair 1.07
Mean z-score -1.73
Structure conservation index 0.48
SVM decision value 0.31
SVM RNA-class probability 0.682898
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 918381 90 - 22407834
CUAAACAUUU-UAAAAUAAAAUACCAAUUGCUCAAGUUACACUUAAUUUUUGUGAGUGCACAGCACUCUAUAUUGUCAGCGGGCAACAUCU
..........-................(((((((((.....))).........((((((...))))))............))))))..... ( -15.20)
>DroSec_CAF1 47515 69 - 1
----------------------ACCAAUUGCUCAAGUUGCACAUAAUUUUUGCGAGUGCACGGCACUCCAUGUUGUCAGCGGGCAACAUCU
----------------------.....((((((..((((.(((.......((.((((((...))))))))...)))))))))))))..... ( -19.20)
>DroSim_CAF1 45376 69 - 1
----------------------ACCAAUUGCUCAAGUUGCACAUAAUUUUUGCGAGUGCACAGCACUCUAUGUUGUCAGCGGGCAACAUCU
----------------------.......((..((((((....))))))..))((((((...)))))).((((((((....)))))))).. ( -19.20)
>DroEre_CAF1 54383 75 - 1
----AGCUAU-UACAAUGAAAUUCCAAUUGCU-AAGUUGCACUUCAUUUUUGCGAGUGCA----------UACUGUCAGCGGGCAACAUCU
----.(((..-.....((......))..((((-.((((((((((((....)).)))))))----------.)))...)))))))....... ( -16.50)
>DroYak_CAF1 49136 86 - 1
----AGUUAUGUAAAAUCAAAUUCACAUUCCU-AAGUUCCCCUUAGUUUUUCCGAGUGCACAGCACUCUAUAUUGUCAGCGGGCAACAUCU
----((..((((.((......)).))))..))-..((((((((..........((((((...)))))).........)).))).))).... ( -15.71)
>consensus
____A__U_U_UA_AAU_AAAUACCAAUUGCUCAAGUUGCACUUAAUUUUUGCGAGUGCACAGCACUCUAUAUUGUCAGCGGGCAACAUCU
...................................(((((.............((((((...))))))....(((....)))))))).... ( -8.32 =  -9.76 +   1.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:59 2006