Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 918,381 – 918,471 |
Length | 90 |
Max. P | 0.682898 |
Location | 918,381 – 918,471 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 71.35 |
Mean single sequence MFE | -17.16 |
Consensus MFE | -8.32 |
Energy contribution | -9.76 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.73 |
Structure conservation index | 0.48 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 918381 90 - 22407834 CUAAACAUUU-UAAAAUAAAAUACCAAUUGCUCAAGUUACACUUAAUUUUUGUGAGUGCACAGCACUCUAUAUUGUCAGCGGGCAACAUCU ..........-................(((((((((.....))).........((((((...))))))............))))))..... ( -15.20) >DroSec_CAF1 47515 69 - 1 ----------------------ACCAAUUGCUCAAGUUGCACAUAAUUUUUGCGAGUGCACGGCACUCCAUGUUGUCAGCGGGCAACAUCU ----------------------.....((((((..((((.(((.......((.((((((...))))))))...)))))))))))))..... ( -19.20) >DroSim_CAF1 45376 69 - 1 ----------------------ACCAAUUGCUCAAGUUGCACAUAAUUUUUGCGAGUGCACAGCACUCUAUGUUGUCAGCGGGCAACAUCU ----------------------.......((..((((((....))))))..))((((((...)))))).((((((((....)))))))).. ( -19.20) >DroEre_CAF1 54383 75 - 1 ----AGCUAU-UACAAUGAAAUUCCAAUUGCU-AAGUUGCACUUCAUUUUUGCGAGUGCA----------UACUGUCAGCGGGCAACAUCU ----.(((..-.....((......))..((((-.((((((((((((....)).)))))))----------.)))...)))))))....... ( -16.50) >DroYak_CAF1 49136 86 - 1 ----AGUUAUGUAAAAUCAAAUUCACAUUCCU-AAGUUCCCCUUAGUUUUUCCGAGUGCACAGCACUCUAUAUUGUCAGCGGGCAACAUCU ----((..((((.((......)).))))..))-..((((((((..........((((((...)))))).........)).))).))).... ( -15.71) >consensus ____A__U_U_UA_AAU_AAAUACCAAUUGCUCAAGUUGCACUUAAUUUUUGCGAGUGCACAGCACUCUAUAUUGUCAGCGGGCAACAUCU ...................................(((((.............((((((...))))))....(((....)))))))).... ( -8.32 = -9.76 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:59 2006