| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,166,456 – 9,166,551 |
| Length | 95 |
| Max. P | 0.920218 |
| Location | 9,166,456 – 9,166,551 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.02 |
| Mean single sequence MFE | -33.46 |
| Consensus MFE | -24.01 |
| Energy contribution | -24.80 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9166456 95 + 22407834 AUCAGCCGCAAAAGGCAACAAAAA----AAUUUGUGGAGCAUGUGGCGCAGUGUUGGUGAGCGUUGACAGCGGAACAGCUGCUGC-AGUAGCACUGCCAA ....((((((....((.(((((..----..)))))...)).))))))(((((((((.(((((((((.........)))).))).)-).)))))))))... ( -35.80) >DroSec_CAF1 3102 95 + 1 AUCAGCCGCAAAAGGCAACAAAAA----AUUUAGUGGAGCAUGUGGCGCAGUGUUGGUGAGCGUUGACAGCUGAACAGCUGCUGC-AGUAGCACUGCCAA ....((((((....((..((....----......))..)).))))))(((((((((.((((((....)((((....))))))).)-).)))))))))... ( -34.10) >DroSim_CAF1 3119 95 + 1 AUCAGCCGCAAAAGGCAACAAAAA----AUUUUGUGGAGCAUGUGGCGCAGUGUUGGUGAGCGUUGACAGAGGAACAGCUGCUGU-UGUAGCACUGCCAA ....((((((....((.(((((..----..)))))...)).))))))(((((((((...(((((((.........)))).)))..-..)))))))))... ( -30.60) >DroEre_CAF1 2962 94 + 1 AUUAGCCGCAAAAGGCAACAAGAA----AA-UUGUGGAGCAUGUGGCGCAGUGUUGGCAAGCGUUGGCGGGCGAACAGCUGUGGC-AGCGGCACUGCCAA ....((((((....((.((((...----..-))))...)).))))))((((((((.((..((....))..)).)))).))))(((-((.....))))).. ( -36.90) >DroYak_CAF1 3247 93 + 1 AUCGGCCGCAAAAGGCAACAA-AA----AA-UUGUGGAGCAUGUGGCGCAGUGUUGGUAAGCGUUGGCAGGCGAACAGCUGUUGC-AGCCGCACUGCCAA ....((((((....((.((((-..----..-))))...)).))))))(((((((.(((..(((..(((.(.....).)))..)))-.))))))))))... ( -32.30) >DroAna_CAF1 4857 100 + 1 UUUAGCCGCAAAUGGCAACAAAAUUUUGAUUCUGAUGAACAUGUGUGGCAGUGCUGCAAAGCGCGGAGGCCUCUACAGCUGUUUCGAACGGGGCUGCCAA ....((((((..((....))......((.(((....)))))..)))))).(((((....)))))((.((((((................)))))).)).. ( -31.09) >consensus AUCAGCCGCAAAAGGCAACAAAAA____AAUUUGUGGAGCAUGUGGCGCAGUGUUGGUAAGCGUUGACAGCCGAACAGCUGCUGC_AGCAGCACUGCCAA ....((((((....((.(((((........)))))...)).))))))(((((((((...(((((((.........)))).))).....)))))))))... (-24.01 = -24.80 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:59 2006