Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,165,472 – 9,165,565 |
Length | 93 |
Max. P | 0.999636 |
Location | 9,165,472 – 9,165,565 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 67.24 |
Mean single sequence MFE | -20.76 |
Consensus MFE | -9.95 |
Energy contribution | -10.91 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.16 |
Mean z-score | -1.87 |
Structure conservation index | 0.48 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9165472 93 + 22407834 GUAGAUCUCUUCAAAGUUUACUUCGCUUUA----------GGCAAACAUGCAAACAUUCAAGCGAAAUGCACUUUGUAC--AGA--UUU--GUUG--UUUGUUGUUUUUAA .(((((((...((((((.((.(((((((..----------.(((....)))........))))))).)).))))))...--)))--)))--)...--.............. ( -20.20) >DroSec_CAF1 2140 85 + 1 GUAAAUCUCCUCAAAGUUUACUUCGCUUAA----------UGCAAACAUGCAAACAUAUAAGCGAAAUGCACUUUGCUA--AGUUUUU-----------UGUUGUUU---A ...........((((((.((.((((((((.----------((((....))))......)))))))).)).))))))...--.......-----------........---. ( -15.90) >DroSim_CAF1 2136 92 + 1 GUAAAUCUCCUCAAAGUUUACUUCGCUUUA----------UGCAAACAUGCAAACAUAUAAGCGAAAUGCACUUUGCAA--AGUUGUUU--GUUG--UUUGUUGUUU---A (((((.((......)))))))...((....----------.))(((((.(((((((.((((((((..(((.....))).--..))))))--))))--))))))))))---. ( -23.00) >DroEre_CAF1 2002 108 + 1 UGAAAUCCCUGCAAAGCUCAGUUCGCUUCCAUGAUUUUACGGUAUAUAUGCCAACAUAUAAGCGAAAUGCACUUUGUACAAAGUUGCACAGAUCG--UUUGUUGCU-UCCA (((((((..((..((((.......)))).)).))))))).((((....))))..((.((((((((..((((((((....)))).))))....)))--)))))))..-.... ( -21.50) >DroYak_CAF1 2244 101 + 1 UUAAAUCUCUUCAAAGCUUACUUCGCUUCAACGAAUUUAAUGUACAUAU--------ACAUGCGAAAUGCACUUUGCAU--AUGUGUACAGAUCGAUUUUGUUGUUGUUUA .............((((.......))))(((((((.((..(((((((((--------(..((((((......)))))))--)))))))))....)).)))))))....... ( -23.20) >consensus GUAAAUCUCUUCAAAGUUUACUUCGCUUCA__________UGCAAACAUGCAAACAUAUAAGCGAAAUGCACUUUGCAA__AGUUGUUC__AUCG__UUUGUUGUUUU__A ...........((((((.((.(((((((............((((....)))).......))))))).)).))))))................................... ( -9.95 = -10.91 + 0.96)
Location | 9,165,472 – 9,165,565 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 67.24 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -14.49 |
Energy contribution | -14.90 |
Covariance contribution | 0.41 |
Combinations/Pair | 1.15 |
Mean z-score | -3.23 |
Structure conservation index | 0.59 |
SVM decision value | 3.82 |
SVM RNA-class probability | 0.999636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9165472 93 - 22407834 UUAAAAACAACAAA--CAAC--AAA--UCU--GUACAAAGUGCAUUUCGCUUGAAUGUUUGCAUGUUUGCC----------UAAAGCGAAGUAAACUUUGAAGAGAUCUAC ..............--....--..(--(((--.(.((((((..(((((((((........(((....))).----------..)))))))))..)))))).).)))).... ( -21.70) >DroSec_CAF1 2140 85 - 1 U---AAACAACA-----------AAAAACU--UAGCAAAGUGCAUUUCGCUUAUAUGUUUGCAUGUUUGCA----------UUAAGCGAAGUAAACUUUGAGGAGAUUUAC .---........-----------.....((--(..((((((..((((((((((......((((....))))----------.))))))))))..))))))..)))...... ( -25.60) >DroSim_CAF1 2136 92 - 1 U---AAACAACAAA--CAAC--AAACAACU--UUGCAAAGUGCAUUUCGCUUAUAUGUUUGCAUGUUUGCA----------UAAAGCGAAGUAAACUUUGAGGAGAUUUAC .---..........--....--......((--(..((((((..(((((((((.(((((..(....)..)))----------)))))))))))..))))))..)))...... ( -24.80) >DroEre_CAF1 2002 108 - 1 UGGA-AGCAACAAA--CGAUCUGUGCAACUUUGUACAAAGUGCAUUUCGCUUAUAUGUUGGCAUAUAUACCGUAAAAUCAUGGAAGCGAACUGAGCUUUGCAGGGAUUUCA .(((-((((.((..--.....)))))..(((((..((((((.((.((((((((((((....)))))...((((......))))))))))).)).))))))))))).)))). ( -29.10) >DroYak_CAF1 2244 101 - 1 UAAACAACAACAAAAUCGAUCUGUACACAU--AUGCAAAGUGCAUUUCGCAUGU--------AUAUGUACAUUAAAUUCGUUGAAGCGAAGUAAGCUUUGAAGAGAUUUAA ............(((((....((((((..(--(((((...(((.....))))))--------)))))))))......((.(..((((.......))))..).))))))).. ( -22.00) >consensus U__AAAACAACAAA__CAAC__AAACAACU__GUGCAAAGUGCAUUUCGCUUAUAUGUUUGCAUGUUUGCA__________UAAAGCGAAGUAAACUUUGAAGAGAUUUAC ...................................((((((..((((((((((((((....))))).................)))))))))..))))))........... (-14.49 = -14.90 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:57 2006