Locus 3205

Sequence ID 2L_DroMel_CAF1
Location 9,165,003 – 9,165,104
Length 101
Max. P 0.645755
window5094

overview

Window 4

Location 9,165,003 – 9,165,104
Length 101
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.18
Mean single sequence MFE -24.35
Consensus MFE -14.98
Energy contribution -15.15
Covariance contribution 0.17
Combinations/Pair 1.31
Mean z-score -1.58
Structure conservation index 0.62
SVM decision value 0.23
SVM RNA-class probability 0.645755
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9165003 101 + 22407834
AUAC-UUAAUUUUGCAGUAUUCCAGUUGGGAUGAUCAGCAGACGAGCGACUUCAUAGAGGUCAAAGUCAACUGCUUGGAUCCCAACAACAGACGUAUUAAAC
....-...................((((((((..(((((((..((..((((((...))))))....))..)))).)))))))))))................ ( -25.00)
>DroVir_CAF1 12627 102 + 1
AUAAUCUUCUCUUUCAGUAUUCAAGCUGGGAUGAGCAACACAUUCGUGAUUUCAUAGAUGUCAAAGUCAAUUGUUUGGAUCCCAACAAUAGGCGAAUAGAGU
........((((..((((......))))..).)))....(((((..((....))..)))))....(((.((((((.(....).)))))).)))......... ( -22.10)
>DroSim_CAF1 1673 101 + 1
AUAC-UUACUUUUACAGUAUUCCAGUUGGGAUGAUCAGCAGACGAGCGACUUCAUAGAGGUCAAAGUCAACUGCUUGGAUCCCAACAACAGACGCAUAAAGC
....-...((((....((......((((((((..(((((((..((..((((((...))))))....))..)))).))))))))))).....))....)))). ( -26.20)
>DroYak_CAF1 1776 101 + 1
AUGC-CUUAUUUUCUAGUAUUCCAGUUGGGACGAUCAGCAGACGAGCGACUUCAUAGAGGUCAAAGUCAACUGCUUGGAUCCCAACAAUCGACGCAUAAAAC
((((-..((((....)))).....((((((((((.(((..(((....((((((...))))))...)))..))).)))..))))))).......))))..... ( -26.60)
>DroMoj_CAF1 7116 94 + 1
--------UCCUCUCAGUAUUCCAGCUGGGAUGAGCAGCAUAUUAGUGAUUUCAUAGAUGUCAAAGUCAACUGUUUGGAUCCUAACAAUAGACGCAUUCAAU
--------((.(((((((......))))))).))((.(.(((((.(((....))).))))))...(((...((((.(....).))))...)))))....... ( -20.90)
>DroAna_CAF1 3364 99 + 1
AUAC---AUUUCCUCAGUAUUCCAGUUGGGACGAGCAACAAACUGGUGAUUUCAUAGAGAUCAAAGUCAACUGCUUGGACCCCAACAAUAGGCGCAUUAAAA
....---.................((((((.((((((....(((..(((((((...))))))).)))....))))))...))))))................ ( -25.30)
>consensus
AUAC__UAAUUUUUCAGUAUUCCAGUUGGGAUGAGCAGCAGACGAGCGACUUCAUAGAGGUCAAAGUCAACUGCUUGGAUCCCAACAAUAGACGCAUAAAAC
........................((((((((.....((......))((((((...))))))................))))))))................ (-14.98 = -15.15 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:55 2006