Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,164,049 – 9,164,151 |
Length | 102 |
Max. P | 0.801139 |
Location | 9,164,049 – 9,164,151 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -29.78 |
Consensus MFE | -23.86 |
Energy contribution | -23.58 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.22 |
Mean z-score | -1.67 |
Structure conservation index | 0.80 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9164049 102 - 22407834 GCAGCUUGUCCUCUCUUUCGGCUGAAGCUUUUGCGCUGGCGAGCUUUUUAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUUUCCGAAAGCGAGCUUA ..((((((......(((((((..(((((((((.((...(((((((....))).)))).((((....))))......)))))))))))))))))))))))).. ( -27.00) >DroSec_CAF1 714 102 - 1 GCAGCUCGUCCUCUCUUUCGGCUGAAGCUUUUGCGCUGGCGAGCUUUUUAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUCUCCGAAAGCGAGCUUA ..((((((......((((((((((..((....))..))))((((((((..(...((..((((....))))))...)..))))))))..)))))))))))).. ( -30.20) >DroSim_CAF1 718 102 - 1 GCAGCUCGUCCUCUCUUUCGGCUGAAGCUUUUGCGCUGUGGAGCUUUUUAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUCUCCGAAAGCGAGCUUU ..((((((......(((((((....(((......)))..(((((((((..(...((..((((....))))))...)..)))))))))))))))))))))).. ( -29.00) >DroEre_CAF1 661 101 - 1 GCAGCUCGUCCUCUCUUUCGGCUGAAGCUU-UGCGCCUGCGAGCUUUUAGGUGUUGCAUCUUUCAUAAGACGUUUCCGAAAAGCUCUCCCAACGCGAGCUUA .((((.((..........))))))((((((-.(((...(.((((((((.((....((.((((....)))).))..)).)))))))).)....))))))))). ( -31.50) >DroYak_CAF1 793 102 - 1 GCAGCCCGUCCUCUCUUUCGGCGGAAGCUUUUGCGCUGCCGAGCUUUGCAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUCGCCGAAUGCGAGCUUA (((((.(..........(((((((..((....)).)))))))((...)).).))))).((((....))))..........((((((((.....)))))))). ( -31.20) >consensus GCAGCUCGUCCUCUCUUUCGGCUGAAGCUUUUGCGCUGGCGAGCUUUUUAGUGUUGCAUCUUUUAUAAGACAUUUCCGAAAAGUUCUCCGAAAGCGAGCUUA ..(((((((......((((((..((.(((((((((((((........)))))))....((((....))))........)))))))).))))))))))))).. (-23.86 = -23.58 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:54 2006