Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,135,853 – 9,135,943 |
Length | 90 |
Max. P | 0.860558 |
Location | 9,135,853 – 9,135,943 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -20.34 |
Consensus MFE | -11.42 |
Energy contribution | -12.45 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.11 |
Mean z-score | -2.34 |
Structure conservation index | 0.56 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9135853 90 - 22407834 CAUAUAUAAUGCCAA-CC--CCCAUAAUGCUCAAC-----UUUGCAUGCACCAUAAAGUUGAGCUUACU-GAUUUUG-UGGUGCACUUGUCCCUUUUUUU ...............-..--......((((.....-----...))))(((((((((((((.((....))-)))))))-))))))................ ( -20.60) >DroSec_CAF1 23346 87 - 1 CAUAUAUAAUGGCAA-CC--CCCAUAAUGCUCAAC-----AUAGCAUGCACCAUAAAGUUGAGCUUACU-GAUUUUG-UGGUGCACUUGUCC---UUUGU .....((((.(((((-..--......(((((....-----..)))))(((((((((((((.((....))-)))))))-))))))..))))).---.)))) ( -24.30) >DroSim_CAF1 23615 87 - 1 CAUAUAUAAUGCCAA-CC--CCCAUAAUGCUCAAC-----UUUGCAUGCACCAUAAAGUUGAGCUUACU-GAUUUUG-UGGUGCACUUGUCC---UUUUU ...............-..--......((((.....-----...))))(((((((((((((.((....))-)))))))-))))))........---..... ( -20.60) >DroEre_CAF1 23530 85 - 1 CUUAUACAAUGCCAA-CC--CCAA--AUGCUCAAC-----UUUGCAUGCAUCAUAAAGUUGAGCUUGCU-GAUUUUG-UGGUGCACUUGUCC---UUUUC .....(((((((..(-((--.(((--(.(((((((-----((((.........))))))))))).....-...))))-.)))))).))))..---..... ( -20.40) >DroWil_CAF1 55737 91 - 1 CA--UGUAUAUCUAACCCCCCACAUAAAGUGCAAUGUUUUUUUGCAUGCU----CAAGUUAUGCUUGGUGGAUUUUAUUGGUGCAGUUGCUC---UUGUG ..--(((((..........((((.....((((((.......))))))...----((((.....)))))))).........))))).......---..... ( -17.71) >DroYak_CAF1 24231 87 - 1 CAUAUAUAAUGCCAA-CC--CCCAUAGAGCGCAAC-----UUUGCAUGCAUCAUAAAGUUGAGCUUACU-GAUUUUG-UGGUGCACUUGUCC---UUUUA ...............-..--.....((..((((..-----..))).((((((((((((((.((....))-)))))))-)))))))...)..)---).... ( -18.40) >consensus CAUAUAUAAUGCCAA_CC__CCCAUAAUGCUCAAC_____UUUGCAUGCACCAUAAAGUUGAGCUUACU_GAUUUUG_UGGUGCACUUGUCC___UUUUU ...........................................(((((((((((((((((.((....)).))))))).)))))))..))).......... (-11.42 = -12.45 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:52 2006