Locus 3201

Sequence ID 2L_DroMel_CAF1
Location 9,133,994 – 9,134,099
Length 105
Max. P 0.716689
window5090

overview

Window 0

Location 9,133,994 – 9,134,099
Length 105
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 91.22
Mean single sequence MFE -24.50
Consensus MFE -22.22
Energy contribution -23.00
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.91
SVM decision value 0.39
SVM RNA-class probability 0.716689
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9133994 105 + 22407834
UUUUAUGAGUGCUUUUGGAUAUAACAGGCAUUCAU---CCAUCAUGGUAGUUACAGUCUAGUUACCUACUUUUAGCUUUUGUGCCGGAAAAUGUUAACCGAUAAAUAA
....(((((((((((((....))).))))))))))---..(((..((((..((.....))..))))...(((..((......))..)))..........)))...... ( -18.80)
>DroSec_CAF1 21484 106 + 1
UUUUAUGAGUGCUUGUGGA--UAACAGGCAUUCAUCAACCAUCAUGGUAGCUACAGUCUAGUUACCUACUUUUAGCUUUUGUGCCUUAAAAUGUUACCCGAUAAAUAA
....((((((((((((...--..)))))))))))).....(((..((((((((.....))))))))......(((((((((.....))))).))))...)))...... ( -28.30)
>DroSim_CAF1 21744 103 + 1
UUUUAUGAGUGCUUGUGGA--UAACAGGCAUUCAU---CCAUCAUGGUAGCCACACUCUAGUUACCCACUUUUAGCUUUUGUGCCGGAAAAUGUUACCCGAUAAAAAA
....((((((((((((...--..))))))))))))---..(((..((((((((((....(((((........)))))..)))).........)))))).)))...... ( -26.40)
>consensus
UUUUAUGAGUGCUUGUGGA__UAACAGGCAUUCAU___CCAUCAUGGUAGCUACAGUCUAGUUACCUACUUUUAGCUUUUGUGCCGGAAAAUGUUACCCGAUAAAUAA
....((((((((((((.......)))))))))))).....(((..((((((((.....))))))))...(((..((......))..)))..........)))...... (-22.22 = -23.00 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:51 2006