Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 143,924 – 144,018 |
Length | 94 |
Max. P | 0.811914 |
Location | 143,924 – 144,018 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.86 |
Mean single sequence MFE | -33.04 |
Consensus MFE | -18.35 |
Energy contribution | -19.74 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.20 |
Mean z-score | -2.24 |
Structure conservation index | 0.56 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811914 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 143924 94 + 22407834 GCAAGCCGUACGAUCGCAAUCCUUUUGGAC---------ACAACGCCGAUCAACGGCGCCGGAGCGACAGCUCCGUAAUGGAACGCAACCGGCUAAAACCACA ...(((((..((.((((..(((....))).---------.....((((.....))))))((((((....)))))).....)).))....)))))......... ( -31.50) >DroVir_CAF1 30575 92 + 1 GAAUGUA--CCGC---------UGGCGUCCAAAGCAAAUACAAUAGAGAUUUACGGCGCCGCAGCGACAGUGCCGUCAUGGACCGCAAACGGCCAAGACCACA ...(((.--.(((---------(((((((.........................))))))..)))))))(((..(((.(((.(((....)))))).)))))). ( -25.81) >DroSec_CAF1 26280 94 + 1 GCAAGCCGUACGAUCGGAAUCCGUUUGGAC---------ACAACGGCGAUCAACGGCGCCGGAGCGAAAGCUCCGUAAUGGAACGCAACCGGCUAAAGCCACA ((..(((((..(((((....(((((.(...---------.))))))))))).)))))..((((((....)))))).........))....(((....)))... ( -40.20) >DroSim_CAF1 27897 94 + 1 GCAAGCCGUACGAUCGGAAUCCGUUUGGAC---------ACAACGGCGAUCAACGGCGCCGGAGCGACAGCUCCGUAAUGGAACGCAACCGGCUAAAGCCACA ((..(((((..(((((....(((((.(...---------.))))))))))).)))))..((((((....)))))).........))....(((....)))... ( -37.20) >DroEre_CAF1 37856 94 + 1 GCAAGCCGUACGAUCGGAAUCCAUUUGGAC---------ACAACGGCGAUCAACGGCGCCGGAGCGACAGCUCUGUAGUGGACCGCAACCGGCUAAAGCCACA ((.(((((......(((..(((....)))(---------((.((((((........))))(((((....))))))).)))..)))....)))))...)).... ( -31.60) >DroYak_CAF1 26452 94 + 1 CCAAGCCGUACGACCGGAAUCCAUUUGGAC---------ACAACGGCGAUCAACGCCGCCGGAGCGACAGCUCUGUCGUGGAACGCAACCGGCCAAAGCCACA ....((..(((((((((..(((....))).---------....(((((.....))))))))((((....)))).))))))....))....(((....)))... ( -31.90) >consensus GCAAGCCGUACGAUCGGAAUCCAUUUGGAC_________ACAACGGCGAUCAACGGCGCCGGAGCGACAGCUCCGUAAUGGAACGCAACCGGCUAAAGCCACA ....(((((..(((((..............................))))).)))))((((((((....))))).....((.......))))).......... (-18.35 = -19.74 + 1.39)
Location | 143,924 – 144,018 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 79.86 |
Mean single sequence MFE | -37.37 |
Consensus MFE | -22.00 |
Energy contribution | -25.34 |
Covariance contribution | 3.34 |
Combinations/Pair | 1.11 |
Mean z-score | -1.82 |
Structure conservation index | 0.59 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 143924 94 - 22407834 UGUGGUUUUAGCCGGUUGCGUUCCAUUACGGAGCUGUCGCUCCGGCGCCGUUGAUCGGCGUUGU---------GUCCAAAAGGAUUGCGAUCGUACGGCUUGC .........(((((((((((.(((....((((((....))))))((((((.....))))))...---------........))).))))))....)))))... ( -38.20) >DroVir_CAF1 30575 92 - 1 UGUGGUCUUGGCCGUUUGCGGUCCAUGACGGCACUGUCGCUGCGGCGCCGUAAAUCUCUAUUGUAUUUGCUUUGGACGCCA---------GCGG--UACAUUC (((.(((.((((((....))).))).))).))).(((.((((((((((((((((((......).))))))...)).)))).---------))))--))))... ( -36.50) >DroSec_CAF1 26280 94 - 1 UGUGGCUUUAGCCGGUUGCGUUCCAUUACGGAGCUUUCGCUCCGGCGCCGUUGAUCGCCGUUGU---------GUCCAAACGGAUUCCGAUCGUACGGCUUGC ..........(((((..(((((((.....)))))....)).)))))((((((((((((((((..---------.....)))))....)))))).))))).... ( -38.30) >DroSim_CAF1 27897 94 - 1 UGUGGCUUUAGCCGGUUGCGUUCCAUUACGGAGCUGUCGCUCCGGCGCCGUUGAUCGCCGUUGU---------GUCCAAACGGAUUCCGAUCGUACGGCUUGC ..........(((((..(((((((.....)))))....)).)))))((((((((((((((((..---------.....)))))....)))))).))))).... ( -38.30) >DroEre_CAF1 37856 94 - 1 UGUGGCUUUAGCCGGUUGCGGUCCACUACAGAGCUGUCGCUCCGGCGCCGUUGAUCGCCGUUGU---------GUCCAAAUGGAUUCCGAUCGUACGGCUUGC ..........(((((..((((..(......)..))))....)))))((((((((((((((((..---------.....)))))....)))))).))))).... ( -34.30) >DroYak_CAF1 26452 94 - 1 UGUGGCUUUGGCCGGUUGCGUUCCACGACAGAGCUGUCGCUCCGGCGGCGUUGAUCGCCGUUGU---------GUCCAAAUGGAUUCCGGUCGUACGGCUUGG ...((((.(((((((......((((.((((((((....))))((((((((.....)))))))))---------)))....))))..)))))))...))))... ( -38.60) >consensus UGUGGCUUUAGCCGGUUGCGUUCCAUUACGGAGCUGUCGCUCCGGCGCCGUUGAUCGCCGUUGU_________GUCCAAAAGGAUUCCGAUCGUACGGCUUGC ..........(((((..(((((((.....))))....))).)))))((((((((((((((((................)))))....)))))).))))).... (-22.00 = -25.34 + 3.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:45 2006