Locus 32

Sequence ID 2L_DroMel_CAF1
Location 143,924 – 144,018
Length 94
Max. P 0.811914
window47 window48

overview

Window 7

Location 143,924 – 144,018
Length 94
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.86
Mean single sequence MFE -33.04
Consensus MFE -18.35
Energy contribution -19.74
Covariance contribution 1.39
Combinations/Pair 1.20
Mean z-score -2.24
Structure conservation index 0.56
SVM decision value 0.65
SVM RNA-class probability 0.811914
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 143924 94 + 22407834
GCAAGCCGUACGAUCGCAAUCCUUUUGGAC---------ACAACGCCGAUCAACGGCGCCGGAGCGACAGCUCCGUAAUGGAACGCAACCGGCUAAAACCACA
...(((((..((.((((..(((....))).---------.....((((.....))))))((((((....)))))).....)).))....)))))......... ( -31.50)
>DroVir_CAF1 30575 92 + 1
GAAUGUA--CCGC---------UGGCGUCCAAAGCAAAUACAAUAGAGAUUUACGGCGCCGCAGCGACAGUGCCGUCAUGGACCGCAAACGGCCAAGACCACA
...(((.--.(((---------(((((((.........................))))))..)))))))(((..(((.(((.(((....)))))).)))))). ( -25.81)
>DroSec_CAF1 26280 94 + 1
GCAAGCCGUACGAUCGGAAUCCGUUUGGAC---------ACAACGGCGAUCAACGGCGCCGGAGCGAAAGCUCCGUAAUGGAACGCAACCGGCUAAAGCCACA
((..(((((..(((((....(((((.(...---------.))))))))))).)))))..((((((....)))))).........))....(((....)))... ( -40.20)
>DroSim_CAF1 27897 94 + 1
GCAAGCCGUACGAUCGGAAUCCGUUUGGAC---------ACAACGGCGAUCAACGGCGCCGGAGCGACAGCUCCGUAAUGGAACGCAACCGGCUAAAGCCACA
((..(((((..(((((....(((((.(...---------.))))))))))).)))))..((((((....)))))).........))....(((....)))... ( -37.20)
>DroEre_CAF1 37856 94 + 1
GCAAGCCGUACGAUCGGAAUCCAUUUGGAC---------ACAACGGCGAUCAACGGCGCCGGAGCGACAGCUCUGUAGUGGACCGCAACCGGCUAAAGCCACA
((.(((((......(((..(((....)))(---------((.((((((........))))(((((....))))))).)))..)))....)))))...)).... ( -31.60)
>DroYak_CAF1 26452 94 + 1
CCAAGCCGUACGACCGGAAUCCAUUUGGAC---------ACAACGGCGAUCAACGCCGCCGGAGCGACAGCUCUGUCGUGGAACGCAACCGGCCAAAGCCACA
....((..(((((((((..(((....))).---------....(((((.....))))))))((((....)))).))))))....))....(((....)))... ( -31.90)
>consensus
GCAAGCCGUACGAUCGGAAUCCAUUUGGAC_________ACAACGGCGAUCAACGGCGCCGGAGCGACAGCUCCGUAAUGGAACGCAACCGGCUAAAGCCACA
....(((((..(((((..............................))))).)))))((((((((....))))).....((.......))))).......... (-18.35 = -19.74 +   1.39) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 143,924 – 144,018
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -37.37
Consensus MFE -22.00
Energy contribution -25.34
Covariance contribution 3.34
Combinations/Pair 1.11
Mean z-score -1.82
Structure conservation index 0.59
SVM decision value 0.28
SVM RNA-class probability 0.666792
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 143924 94 - 22407834
UGUGGUUUUAGCCGGUUGCGUUCCAUUACGGAGCUGUCGCUCCGGCGCCGUUGAUCGGCGUUGU---------GUCCAAAAGGAUUGCGAUCGUACGGCUUGC
.........(((((((((((.(((....((((((....))))))((((((.....))))))...---------........))).))))))....)))))... ( -38.20)
>DroVir_CAF1 30575 92 - 1
UGUGGUCUUGGCCGUUUGCGGUCCAUGACGGCACUGUCGCUGCGGCGCCGUAAAUCUCUAUUGUAUUUGCUUUGGACGCCA---------GCGG--UACAUUC
(((.(((.((((((....))).))).))).))).(((.((((((((((((((((((......).))))))...)).)))).---------))))--))))... ( -36.50)
>DroSec_CAF1 26280 94 - 1
UGUGGCUUUAGCCGGUUGCGUUCCAUUACGGAGCUUUCGCUCCGGCGCCGUUGAUCGCCGUUGU---------GUCCAAACGGAUUCCGAUCGUACGGCUUGC
..........(((((..(((((((.....)))))....)).)))))((((((((((((((((..---------.....)))))....)))))).))))).... ( -38.30)
>DroSim_CAF1 27897 94 - 1
UGUGGCUUUAGCCGGUUGCGUUCCAUUACGGAGCUGUCGCUCCGGCGCCGUUGAUCGCCGUUGU---------GUCCAAACGGAUUCCGAUCGUACGGCUUGC
..........(((((..(((((((.....)))))....)).)))))((((((((((((((((..---------.....)))))....)))))).))))).... ( -38.30)
>DroEre_CAF1 37856 94 - 1
UGUGGCUUUAGCCGGUUGCGGUCCACUACAGAGCUGUCGCUCCGGCGCCGUUGAUCGCCGUUGU---------GUCCAAAUGGAUUCCGAUCGUACGGCUUGC
..........(((((..((((..(......)..))))....)))))((((((((((((((((..---------.....)))))....)))))).))))).... ( -34.30)
>DroYak_CAF1 26452 94 - 1
UGUGGCUUUGGCCGGUUGCGUUCCACGACAGAGCUGUCGCUCCGGCGGCGUUGAUCGCCGUUGU---------GUCCAAAUGGAUUCCGGUCGUACGGCUUGG
...((((.(((((((......((((.((((((((....))))((((((((.....)))))))))---------)))....))))..)))))))...))))... ( -38.60)
>consensus
UGUGGCUUUAGCCGGUUGCGUUCCAUUACGGAGCUGUCGCUCCGGCGCCGUUGAUCGCCGUUGU_________GUCCAAAAGGAUUCCGAUCGUACGGCUUGC
..........(((((..(((((((.....))))....))).)))))((((((((((((((((................)))))....)))))).))))).... (-22.00 = -25.34 +   3.34) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:45 2006