| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,127,446 – 9,127,547 |
| Length | 101 |
| Max. P | 0.844499 |
| Location | 9,127,446 – 9,127,547 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.55 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -13.01 |
| Energy contribution | -12.34 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9127446 101 + 22407834 GCAGUAUUUUGGAUCCCAAGGUGAGCUUGCAGCAAAGUCUGCACAAAAAACAAAAUAAAAAACAGUCUUAA---CUGAUCCCAAAUCAAA----------------AGAAGAUCUCAAAA ......(((((((((....((.((...(((((......)))))...................((((....)---))).))))...((...----------------.)).)))).))))) ( -16.00) >DroEre_CAF1 15027 115 + 1 GCAGCAUUUUGGAUCCCAAGGUGAGCUUGCAGCAAACUCUGCACACAGAACACAGAA----GCGAUCCUAAAA-GUGAUCCUGCAUGCACAUCAGCUAGCCUAAGAUUAAGAUCUCAAAA (((((...((((...))))((((.((.(((((.....((((....))))........----..(((((.....-).))))))))).)).)))).))).))...((((....))))..... ( -26.50) >DroYak_CAF1 15432 119 + 1 GCAGCAUUUUGGAUCCCAAGGUGAGCUUGCAGCAAACUCUGCACACAAAACGAAAAAA-AGUCGAUCUUAAAACGUGAUAUUUAAUUCACAUUAAGUAGAGUAAACAUUAUAUCUCGAAA (((.((((((((...))))))))....))).....(((((((........(((.....-..)))..........((((........)))).....))))))).................. ( -24.60) >consensus GCAGCAUUUUGGAUCCCAAGGUGAGCUUGCAGCAAACUCUGCACACAAAACAAAAAAA_A_ACGAUCUUAAAA_GUGAUCCUAAAUCCACAU_A__UAG__UAA__AUAAGAUCUCAAAA ((((((((((((...)))))))).((.....)).....))))..................................((((..............................))))...... (-13.01 = -12.34 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:47 2006