Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,123,653 – 9,123,748 |
Length | 95 |
Max. P | 0.788290 |
Location | 9,123,653 – 9,123,748 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 81.73 |
Mean single sequence MFE | -16.47 |
Consensus MFE | -11.32 |
Energy contribution | -11.30 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.23 |
Mean z-score | -2.05 |
Structure conservation index | 0.69 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9123653 95 + 22407834 UUUUUUACAAUACCCCUCCAUAU----ACCCCUGUUCUUCUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA .......................----.((((((....(((((((.......)))))))))))))..(((......))).....((((......)))). ( -17.60) >DroSec_CAF1 11098 95 + 1 UUUUUUACAAUACCCCUCCAUAU----ACCCGUGUUCUUCUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA .......................----...........(((((((.......))))))).(((((((........)))))))..((((......)))). ( -16.90) >DroSim_CAF1 11190 95 + 1 UUUUUUACAAUACCCCUCCAUAU----ACCCAUGUUCUUCUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA .......................----...........(((((((.......))))))).(((((((........)))))))..((((......)))). ( -16.90) >DroEre_CAF1 11178 99 + 1 UUUUGUACAGUACCCCUGCAUAUAUGUACUCCUCUUAGUAUAAGACCUCUAUGAUUAGAUAGGGGCUGACACAAUGGUUCCUCAAUCAUAAUUCUGAUA ...(((.(((..((((((......((((((......)))))).....((((....))))))))))))))))..((((((....)))))).......... ( -19.90) >DroYak_CAF1 11467 95 + 1 UUUUUUACAGCGCCCCUCCAUAU----ACCCCUGUUCUUAUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA ...........(((.........----.((((((((....(((((.......)))))))))))))..........)))......((((......)))). ( -15.95) >DroAna_CAF1 27518 76 + 1 ------------CCCC------U----ACUUUUAUACUUUUAAUCCAAUUUUGAUAAGAUAGGGGCUGACACAAUAGA-CCUCAAUCAAAAUUUUGAUA ------------((((------(----(.((((((.(...............))))))))))))).............-.....(((((....))))). ( -11.56) >consensus UUUUUUACAAUACCCCUCCAUAU____ACCCCUGUUCUUCUAAUCCCUCAAUGAUUAGAUAGGGGCUGACACAAUGGUCCCUCAAUCAUAAUUUUGAUA ..................................................((((((....(((((((........))))))).)))))).......... (-11.32 = -11.30 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:45 2006