Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,114,784 – 9,114,885 |
Length | 101 |
Max. P | 0.988785 |
Location | 9,114,784 – 9,114,885 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 74.53 |
Mean single sequence MFE | -19.52 |
Consensus MFE | -2.48 |
Energy contribution | -4.36 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.23 |
Mean z-score | -2.41 |
Structure conservation index | 0.13 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9114784 101 + 22407834 AUCAACACUAGCACC-AAAAAGC--------AGCAGUGAUGGCAGCUGUAGGUUACAAAAAAGUUACUUGCAGUCAGUAAAAAUAGCAAAGCAUUGAA-AAAAA-AAA-CUUU .((((((((.((...-.......--------.))))))...((.(((((((((.((......)).)))))))))..((.......))...)).)))).-.....-...-.... ( -19.20) >DroSec_CAF1 2393 99 + 1 AUCAACACUAACAGC-AAAAAGC--------AGCAGAGAUGACAGCUGUAGGUUACAAAAAAGUUACUUGCA----GUAAAAAUAGCAAAGCGUUGAA-AAAAAAAAACGUUU .(((((.((....((-.....))--------.((....((....(((((((((.((......)).)))))))----))....)).))..)).))))).-.............. ( -20.30) >DroSim_CAF1 2403 100 + 1 AUCGACACUAACAGC-AAAAGGC--------AGCAGAGAUGACAGCUGUAGGUUACAAAAAAGUUACUUGCA----GUAAAAAUAGCAAAGCGUUGAACAAAAAAAAACCUUU .(((((.((....((-.....))--------.((....((....(((((((((.((......)).)))))))----))....)).))..)).)))))................ ( -19.90) >DroEre_CAF1 2431 105 + 1 AUCAACUCCAACAGC-AAAAAGCAGGAGGCCAGCAGAGCUGGCAGCUGUAGCUAGCAAAAAAGAUACUUACA----CCAAAAAUCGCUUAGCAUGGGA-UACAA-AAA-UAUU ......(((((((((-......(....)((((((...)))))).))))).((((((................----.........)).)))).)))).-.....-...-.... ( -23.01) >DroYak_CAF1 2450 94 + 1 AUCAACACUUACAGCCAAAAAGCUGGAGGCCAGCAGUGAUGGCAG------------AAAAAGUUACUUACA----GUAAAAAAAGCUUAGCAUAGGA-UAAAA-AAC-UAUU .......((((..((((.(..(((((...)))))..)..))))((------------......((((.....----))))......)).....)))).-.....-...-.... ( -15.20) >consensus AUCAACACUAACAGC_AAAAAGC________AGCAGAGAUGGCAGCUGUAGGUUACAAAAAAGUUACUUGCA____GUAAAAAUAGCAAAGCAUUGAA_AAAAA_AAA_CUUU ................................((.......((...(((((((.((......)).)))))))....)).......)).......................... ( -2.48 = -4.36 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:42 2006