Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,111,477 – 9,111,595 |
Length | 118 |
Max. P | 0.902602 |
Location | 9,111,477 – 9,111,595 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 82.71 |
Mean single sequence MFE | -30.26 |
Consensus MFE | -19.79 |
Energy contribution | -21.59 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.30 |
Mean z-score | -2.33 |
Structure conservation index | 0.65 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.902602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9111477 118 - 22407834 UAUUGAGGUCAUUGGAUAAAGGACAUGUUCAGUUUUUAGGCAGCACAGGUCCUUAAAUUUCUUAAACUUAAAGUCAGUUUGAGUAAUUCGUUUGGGGAGUUUCGAGGACUUCAUUUAA ...(((((((.(((((..((((((.(((.(.(((....))).).))).))))))..(((((((((((....(.((.....)).).....)))))))))))))))).)))))))..... ( -30.30) >DroSec_CAF1 13588 118 - 1 UAUUGAGGUCAUUGGAUAAAGGACAUGUUCAGUUUUUAGGCAAUACAGGUCCUUAAAUUUCUUAAACUUAAAGUCAGUUUGAGUAAUUGGUUUGGGAAGUUUCGAGGACUUCAUUUAA ...(((((((.(((((..((((((.(((...(((....)))...))).))))))..((((((((((((...(.((.....)).)....))))))))))))))))).)))))))..... ( -33.30) >DroSim_CAF1 13715 118 - 1 UAUUGAGGUCAUUGGAUAAAGGACAUGUUCAGUUUUUAGGCAAUACAGGUCCUUAAAUUUCUUAAACUUAAAGUCAGUUUGAGUAAUUGGUUUGGGAAGUUUCGAGGACUUCAUUUAA ...(((((((.(((((..((((((.(((...(((....)))...))).))))))..((((((((((((...(.((.....)).)....))))))))))))))))).)))))))..... ( -33.30) >DroEre_CAF1 13681 113 - 1 UAUUGGGGCCAUUGGACAAGGCACAAUUUCAAUUUGAAGUCAGUAU-----CUUAAAUUUAUAAAUCUUAAAGUCGGUUCGAGUAGCUGGUUUGAAAAGUUCUUAGGGCCUCAUUUAA ...(((((((...(((((((..((.(((((.....)))))..))..-----))).............(((((.((((((.....)))))))))))...))))....)))))))..... ( -26.90) >DroYak_CAF1 18662 118 - 1 UAUUGAGGCUAUUGGAUAGAGCUCAAGUUGAAUUUAAAGUCAGUACAGGUCCUAAAAUUUACCAAACUUAAAGUCAGUUUGAGUAACUGGCUUGAAAAGUUCCUAGGACUUCAUUCAA ..((((((((.((((((..(((....)))..)))))))))).....((((((((..........(((((.(((((((((.....)))))))))...)))))..))))))))...)))) ( -27.50) >consensus UAUUGAGGUCAUUGGAUAAAGGACAUGUUCAGUUUUUAGGCAGUACAGGUCCUUAAAUUUCUUAAACUUAAAGUCAGUUUGAGUAAUUGGUUUGGGAAGUUUCGAGGACUUCAUUUAA ...(((((((.(((((..((((((.(((................))).))))))..((((((((((((...(.(((...))).)....))))))))))))))))).)))))))..... (-19.79 = -21.59 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:41 2006