Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,110,244 – 9,110,337 |
Length | 93 |
Max. P | 0.625233 |
Location | 9,110,244 – 9,110,337 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 93.66 |
Mean single sequence MFE | -20.92 |
Consensus MFE | -16.32 |
Energy contribution | -16.24 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -1.65 |
Structure conservation index | 0.78 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9110244 93 - 22407834 AAAGGAGACGAAAAGGAGCCGGGGAAUGGCGGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA ...(....).......(((((.((.((((((.(......).))))))..(((((((((..((....))...)))))))))...)).))))).. ( -22.20) >DroSec_CAF1 12354 93 - 1 AAAGGAAACGAAAAGGGGCAGGGGAUUGGCAGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA ........((.((..(((((((..(((.((((....))((.((((....)))).)).........))..)))..)))))))..)).))..... ( -19.80) >DroSim_CAF1 12482 93 - 1 AAAGGAAACGAAAAGGGGCAGGGGCUUGGCGGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA ........((.((..(((((((......((((....)(((.((((....)))).))).......))).......)))))))..)).))..... ( -19.82) >DroEre_CAF1 12447 93 - 1 AAAGGAAGGGAAAUGGAACAGGGGAUUGGCGGGAAACUACGUGUCAUGUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGCUAA ...((..(.((....(((((((..(((.((((....)(((.((((....)))).))).......)))..)))..)))))))..)).)..)).. ( -21.90) >DroYak_CAF1 17432 93 - 1 AAAGGAAAGGAAAAUGAGCAGGGGGUUGGCGGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA .........(....((((((((..(((.((((....)(((.((((....)))).))).......)))..)))..))))))))....)...... ( -20.90) >consensus AAAGGAAACGAAAAGGAGCAGGGGAUUGGCGGGAAACUACGUGUCAUAUGACAAGUGAAAUGUGCGCAAAAUUACUUGUUUAGUUGCGGUUAA ......(((..((..(((((((......((((....)(((.((((....)))).))).......))).......)))))))..))...))).. (-16.32 = -16.24 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:35 2006