Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,109,070 – 9,109,179 |
Length | 109 |
Max. P | 0.803657 |
Location | 9,109,070 – 9,109,179 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 97.25 |
Mean single sequence MFE | -30.46 |
Consensus MFE | -28.20 |
Energy contribution | -28.24 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.34 |
Structure conservation index | 0.93 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803657 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9109070 109 - 22407834 GCAAAGGUGUUUAUAGCAAGUUGAGAUUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUAUUCGCUUUUUUAAGCC ((((((((((((((((((.(..(((........)))..).)))))......)))))))(((..((((.....))))..))).))))))........((((....)))). ( -27.90) >DroSec_CAF1 11176 109 - 1 GCAAAGGUGUUUAUUGCAAGUUGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUUUUCGCUUUUUUAAGCC (((((((((((((.....(((.((((((....))))))...))).......)))))))(((..((((.....))))..))).))))))........((((....)))). ( -29.30) >DroSim_CAF1 11299 109 - 1 GCAAAGGUGUUUAUAGCAAGUUGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUUUUCGCUUUUUUAAGCC ((((((((((((((((((....((((((....))))))..)))))......)))))))(((..((((.....))))..))).))))))........((((....)))). ( -30.20) >DroEre_CAF1 11322 109 - 1 GCAAAGGUGUUUAUCGCAGGUGGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUAUUCGCUUUUUUAAGCC ((((((((((((((((((((..((((((....))))))))))).)).....)))))))(((..((((.....))))..))).))))))........((((....)))). ( -34.80) >DroYak_CAF1 16245 109 - 1 GCAAAGGUGUUUAUCGCAAGUUGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUGAGGCUUUCACACUUUGUGUGUAUUCGCUUUUUUAAGCC (((((((((((((((...(((.((((((....))))))...)))..)))...))))))(((..((((.....))))..))).))))))........((((....)))). ( -30.10) >consensus GCAAAGGUGUUUAUAGCAAGUUGAGAGUGUGUGCUUUCCCUGCUGAGAUUUUGAGCACGUGCUAGUCCUUAAGGCUUUCACACUUUGUGUGUAUUCGCUUUUUUAAGCC (((((((((((((.....(((.((((((....))))))...))).......)))))))(((..((((.....))))..))).))))))........((((....)))). (-28.20 = -28.24 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:30 2006