| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,108,577 – 9,108,697 |
| Length | 120 |
| Max. P | 0.806118 |
| Location | 9,108,577 – 9,108,697 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.17 |
| Mean single sequence MFE | -34.44 |
| Consensus MFE | -30.28 |
| Energy contribution | -30.78 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9108577 120 + 22407834 UCCACUGCCGUAAUGCGCCUGUUUGUAUGGCAAUUGCUGCUCUGGGCCGAAUUUUUUAUGAACUUGCCGGGUCAUGACUUUUAUGAUUUGUAAGUCCAUGGGUUCAUAAAGCCUUUUGGU .(((..((.(((((..(((.........))).))))).))..)))((((((..((((((((((((((((((((((((...))))))))))...))....))))))))))))...)))))) ( -36.80) >DroSec_CAF1 10735 120 + 1 UCCACUGCCGUAAUGCGCCUGUUUGUAUGGCAAUUGCUGCUCUGGGCCGAAUUUUUUAUGAACUUGCCGGGUCAUGACUUUUAUGAUUUGUAAGUCCAUGGGUUCAUAAAGCCUUUUGGU .(((..((.(((((..(((.........))).))))).))..)))((((((..((((((((((((((((((((((((...))))))))))...))....))))))))))))...)))))) ( -36.80) >DroSim_CAF1 10818 120 + 1 UCCACCGUCGUAAUGCGCCUGUUUGUAUGGCAAUUGCUGCUCUGGGCCGAAUUUUUUAUGAACUUGCCGGGUCAUGACUUUUAUGAUUUGUAAGUCCAUGGGUUCAUAAAGCCUUUUGGU .(((..((.(((((..(((.........))).))))).))..)))((((((..((((((((((((((((((((((((...))))))))))...))....))))))))))))...)))))) ( -34.30) >DroEre_CAF1 10935 120 + 1 UCCGCCGCCGUAAUGCGCCUGUUUGUAUGGCAAUUGCUGCUCUGGACCGAAUUUUUUAUGAACUUCUCGGGUCAUGACUUUUAUGAUUUCUAAGUCCAGGGGCUCACGGAGCCUUUGGGU ((((..((.(((((..(((.........))).))))).))..))))((((................))))(((((((...))))))).......(((((((((((...))))))))))). ( -37.09) >DroYak_CAF1 15778 111 + 1 UACGCUGCCGUAAUGCGCCUGUUUGUAUGGCAAUUGCUGCUCUGGGCCGCAUUUUUUAUGAACUUCCCGGGUCAUGACUUUUGUGAUUUGUAAGUCCAUGGG---------UCUUUUGGU ...(((((((((..((....))...)))))))...))((..(((((...(((.....))).....)))))..)).((((..((.((((....))))))..))---------))....... ( -27.20) >consensus UCCACUGCCGUAAUGCGCCUGUUUGUAUGGCAAUUGCUGCUCUGGGCCGAAUUUUUUAUGAACUUGCCGGGUCAUGACUUUUAUGAUUUGUAAGUCCAUGGGUUCAUAAAGCCUUUUGGU .(((..((.(((((..(((.........))).))))).))..)))((((((.....((((.((((((.(((((((((...))))))))))))))).))))((((.....)))).)))))) (-30.28 = -30.78 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:29 2006