Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,107,761 – 9,107,881 |
Length | 120 |
Max. P | 0.947576 |
Location | 9,107,761 – 9,107,881 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -48.84 |
Consensus MFE | -44.04 |
Energy contribution | -44.56 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.10 |
Mean z-score | -1.52 |
Structure conservation index | 0.90 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9107761 120 - 22407834 ACUCCACGUUGCACAGGUAACUGAAGUUUGUGCCCCUCACAGCGGGCGGGACUUGAGCUACUUGGCGGGGCACCUCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA .......((..(.((((((.((.((((((.((((((.....).))))))))))).))((((((((.((....)).))))))))......)))))).(((......))).....)..)).. ( -47.70) >DroSec_CAF1 9922 120 - 1 ACUCCACGUUGCGCAGGUAACUGAAGUUUGUGCCCCUCACAGCGGGCGGGACUUGAGCUACUUGGCGGGGAACCCCCGAGUGAAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA .(((((((((((.((((((.((.((((((.((((((.....).))))))))))).)).))))))))((((...))))........))))))...)))((....))(((((...))))).. ( -47.30) >DroSim_CAF1 10005 120 - 1 ACUCCACGUUGCGCAGGUAACUGAAGUUUGUGCCCCUCACAGCGGGCGGGACUUGAGCUACUUGGCGGGGAACCCCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA ..(((((...((.((((((.((.((((((.((((((.....).))))))))))).)).))))))))((((...))))..))))).....((((((((((......))).)))...)))). ( -50.00) >DroEre_CAF1 10073 120 - 1 ACUCGCCAUUGCACAGGUAACUCAAGUUCGUGCCCCUCGCAGCGGGCGGCACUCCAGCUACUUGGCGGGGAACCCCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA ....((((..((.((((((..........(((((.((((...)))).))))).....((((((((.((....)).))))))))......))))))..))..))))(((((...))))).. ( -54.00) >DroYak_CAF1 14768 119 - 1 ACUCGACAUGGCACAGGUAACAGGAGUUUGUGCCCCUCACAGCGGGCGG-GCUUGAGCUACUUGGCGGGGAACCCCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGGCAUCAAGUGGCAA ......((.(((.((((((.((((((((((.(((((((.....))).))-)).)))))).)))).(((((...)))))...........))))))..))).))((.((.....)).)).. ( -45.20) >consensus ACUCCACGUUGCACAGGUAACUGAAGUUUGUGCCCCUCACAGCGGGCGGGACUUGAGCUACUUGGCGGGGAACCCCCGAGUGGAAAACGUGCCUGAGGCUUUGGCGCCAUCAAGUGGCAA ......((..((.((((((.((.((((((.((((((.....).))))))))))).))((((((((.((....)).))))))))......))))))..))..))..(((((...))))).. (-44.04 = -44.56 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:26 2006