Locus 3185

Sequence ID 2L_DroMel_CAF1
Location 9,107,189 – 9,107,302
Length 113
Max. P 0.794915
window5060

overview

Window 0

Location 9,107,189 – 9,107,302
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.24
Mean single sequence MFE -27.59
Consensus MFE -27.10
Energy contribution -27.30
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.22
Structure conservation index 0.98
SVM decision value 0.60
SVM RNA-class probability 0.794915
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9107189 113 + 22407834
AACC-------ACGACCUGGGCCAAUUACAAGACAAGCGGCCAUAAAUUACGCACUCAAAAAAACAUUCGCAGACUGCACUUGACCUCUUUGAUUGUGGUCUGCUGGUCUCGACAUUUGU
....-------..((((..((((...............))))...........................((((((..((.(..(.....)..).))..)))))).))))........... ( -28.26)
>DroSec_CAF1 9362 113 + 1
AACC-------ACGACCUGGGCCAAUUACAAGACAAGCAGCCAUAAAUUACGCACUCAAAAAAACAUUCGCAGACUGCACUUGACCUCUUUGAUUGUGGUCUGCUGGUCUCGACAUUUGU
....-------..((((..(((.................)))...........................((((((..((.(..(.....)..).))..)))))).))))........... ( -24.33)
>DroSim_CAF1 9433 113 + 1
AACC-------ACGACCUGGGCCAAUUACAAGACAAGCGGCCAUAAAUUACGCACUCAAAAAAACAUUCGCAGACUGCACUUGACCUCUUUGAUUGUGGUCUGCUGGUCUCGACAUUUGU
....-------..((((..((((...............))))...........................((((((..((.(..(.....)..).))..)))))).))))........... ( -28.26)
>DroEre_CAF1 9525 120 + 1
AACCACGAACCACGACCUGGGCCAAUUACAAGACAAGCGGCCAUAAAUUACGCACUCAAAAAAACAUUCGCAGACUGCACUUGACCUCUUUGAUUGUGGUCUGCUGGUCUCGACAUUUGU
.....(((((((.......((((...............))))...........................((((((..((.(..(.....)..).))..)))))))))).)))........ ( -28.86)
>DroYak_CAF1 14193 113 + 1
AACC-------ACGACCUGGGCCAAUUACAAGACAAGCGGCCAUAAAUUACGCACUCAAAAAAACAUUCGCAGACUGCACUUGACCUCUUUGAUUGUGGUCUGCUGGUCUCGACAUUUGU
....-------..((((..((((...............))))...........................((((((..((.(..(.....)..).))..)))))).))))........... ( -28.26)
>consensus
AACC_______ACGACCUGGGCCAAUUACAAGACAAGCGGCCAUAAAUUACGCACUCAAAAAAACAUUCGCAGACUGCACUUGACCUCUUUGAUUGUGGUCUGCUGGUCUCGACAUUUGU
.............((((..((((...............))))...........................((((((..((.(..(.....)..).))..)))))).))))........... (-27.10 = -27.30 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:22 2006