Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,105,085 – 9,105,190 |
Length | 105 |
Max. P | 0.997118 |
Location | 9,105,085 – 9,105,190 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 94.38 |
Mean single sequence MFE | -22.22 |
Consensus MFE | -19.48 |
Energy contribution | -19.72 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.20 |
Structure conservation index | 0.88 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9105085 105 + 22407834 CUCAAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGACCAAAGAAAGCCAAGGAAAGUGGCAAACAAAGGAGAACA ......((..(((......(((((((((((.......)))))(((((......))))).......))))))....((((.......)))).......)))..)). ( -21.20) >DroSec_CAF1 7272 105 + 1 CUCAAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGACCAAACAAAGCCAACGAAAGUGGCAAACAAAGGAGGACA ......((..(((......(((((((((((.......)))))(((((......))))).......))))))....((((.(....))))).......)))..)). ( -25.50) >DroSim_CAF1 7354 105 + 1 CUCAAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGACCAAACAAAGCCAACGAAAGUGGCAAACAAAGGAGGACA ......((..(((......(((((((((((.......)))))(((((......))))).......))))))....((((.(....))))).......)))..)). ( -25.50) >DroEre_CAF1 7453 105 + 1 CUCGAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUACACAAAAUCGGAAUGAUACCAAACAAAGCCAGCGAAAAUGGCAAACAAAGGAGGACA ......((..(((......(((((((.........((((.((.((((......)))))))))).)))))))....((((.......)))).......)))..)). ( -22.70) >DroYak_CAF1 7772 105 + 1 CUUGAAAUAAUCCGUGGAAUUUGAUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGAACAAACAAAGCCAAAGAAAAUGGCAAACAAAGGAGGACA ..........(((((((((((((((.....))))).)))))((((((......)))))).......)).......((((.......)))).......)))..... ( -16.20) >consensus CUCAAAGUAAUCCGUGGAAUUUGGUGGAAAAUUAGCAUUUCCUGGUUAAACAAAAUCAGAAUGAGACCAAACAAAGCCAACGAAAGUGGCAAACAAAGGAGGACA ......((..(((......(((((((((((.......)))))(((((......))))).......))))))....((((.......)))).......)))..)). (-19.48 = -19.72 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:15 2006