Locus 3180

Sequence ID 2L_DroMel_CAF1
Location 9,102,061 – 9,102,153
Length 92
Max. P 0.787280
window5049

overview

Window 9

Location 9,102,061 – 9,102,153
Length 92
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 93.64
Mean single sequence MFE -24.48
Consensus MFE -18.68
Energy contribution -19.08
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.76
SVM decision value 0.58
SVM RNA-class probability 0.787280
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9102061 92 - 22407834
UCAAAAAAAUGCCAUAAAAAAUGCAAUAAUGGUCAGACCCGAAGCAGGCAUUGCACAUGCAGCC-----CGGCCAGAAAUCGAGUCAAGGGUUUG-AA
...........((((.............))))((((((((......(((..(((....))))))-----.(((..(....)..)))..)))))))-). ( -22.42)
>DroSec_CAF1 4232 92 - 1
UCAAAAAAAUGCCAUAAAAAAUGCAAUAAUGGUCAGACCCGAAGCAGGCAUUGCACAUGCAGCC-----CGGCCGGAAAUCGAGUCAAGGGUUUG-GA
..........(((((.............)))))(((((((......(((..(((....))))))-----.(((((.....)).)))..)))))))-.. ( -23.62)
>DroSim_CAF1 4305 92 - 1
UCAAAAAAAUGCCAUAAAAAAUGCAAUAAUGGUCAGACCCGAAGCAGGCAUUGCACAUGCAGCC-----CGGCCGGAAAUCGAGUCAAGGGUUCG-GA
..........(((((.............))))).....(((((.(.(((..(((....))))))-----.(((((.....)).)))...).))))-). ( -20.62)
>DroEre_CAF1 4298 91 - 1
UCAAAAAAACGCCAUAAAAAAUGCAAUAAUGGUCAGACCCG-AGCAGGCAUUGCACAUGCAAUG-----UGGCCGGAAAUCGAGUCAAGGGUUUG-GA
..........(((((.............)))))(((((((.-.....(((((((....))))))-----)(((((.....)).)))..)))))))-.. ( -26.22)
>DroYak_CAF1 4509 98 - 1
UCAAAAAAAUGCCAUAAAAAAUGCAAUAAUGGUCAGACCCGAAGCAGGCAUUGCACAUGCAGCCAGGCUCGGCCGGAAAUCGAGUCAAGGGUUUGGGA
..........(((((.............)))))(((((((......(((..(((....)))))).(((((((.......)))))))..)))))))... ( -29.52)
>consensus
UCAAAAAAAUGCCAUAAAAAAUGCAAUAAUGGUCAGACCCGAAGCAGGCAUUGCACAUGCAGCC_____CGGCCGGAAAUCGAGUCAAGGGUUUG_GA
..........(((((.............)))))(((((((...(((.((...))...)))..........(((((.....)).)))..)))))))... (-18.68 = -19.08 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:12 2006