Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 905,967 – 906,091 |
Length | 124 |
Max. P | 0.903228 |
Location | 905,967 – 906,064 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -18.93 |
Consensus MFE | -8.27 |
Energy contribution | -8.55 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -3.14 |
Structure conservation index | 0.44 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 905967 97 + 22407834 CGCAUGC---AUGUAAAUAAAUA----CAAAUACAUGUGAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAGUCU .((.(((---(((((........----....)))))))).)).....(((((......)))))((((.(((((((((........))))))))).))))..... ( -23.00) >DroVir_CAF1 47304 98 + 1 AACAUGC---ACACACAGAAACACACCCGAAUAAAUAUAAGCAUAAAUAAUAAAAGCAUAUUAGUGUACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAG--- ....(((---.(.........(......)...........((((...((((((((((..(((((........)))))..))))))))))..))))).))).--- ( -14.70) >DroGri_CAF1 36442 86 + 1 AACAUGC---ACACA------------CGAAUAAAUAUAAACAUAAAUAAUAAACGCAUAUUAGUGCACAGUUUAAUUCGUUUUUAUUUAAAAGCAAACAG--- ....(((---....(------------(((((...(((........))).(((((((((....))))...)))))))))))((((....))))))).....--- ( -8.70) >DroSim_CAF1 32903 97 + 1 CGCUUGC---AUGUAAAUAAAUA----CAAAUACAUGUGAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAAGCGCGCAGUCU .(((..(---(((((........----....))))))..))).....(((((......)))))((((.(.(((((((........))))))).).))))..... ( -23.60) >DroYak_CAF1 36273 97 + 1 CGCAUGC---AUGUAAAUAAAUA----CAAAUACAUGUGCGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAAGCGCGCAGUCU .((..((---(((((........----....)))))))((((.....((((((((((..(((((........)))))..))))))))))....))))))..... ( -23.70) >DroAna_CAF1 33944 96 + 1 AACAUGCAACAUGCAAAUAAAUA----CAGAUA----UAAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAGCAU ...((((...((((..(((....----....))----)..))))...................((((.(((((((((........))))))))).)))).)))) ( -19.90) >consensus AACAUGC___AUGCAAAUAAAUA____CAAAUACAUGUAAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAAGCGCGCAGUCU ........................................((.....((((((((((..(((((........)))))..))))))))))....))......... ( -8.27 = -8.55 + 0.28)
Location | 905,992 – 906,091 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.60 |
Mean single sequence MFE | -21.08 |
Consensus MFE | -13.52 |
Energy contribution | -13.30 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.45 |
Structure conservation index | 0.64 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 905992 99 + 22407834 ACAUGUGAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAGUCUGUCGAAAGCGGCAAGGUUUUCCCGGGA ...((((.((((...((((((((((..(((((........)))))..))))))))))..)))).)))).((((..((((((......)))))).)))). ( -25.00) >DroVir_CAF1 47333 79 + 1 AAAUAUAAGCAUAAAUAAUAAAAGCAUAUUAGUGUACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAG---GUAAAAAGCG----------------- ........((.....(((((......)))))(((..(((((((((........)))))))))..)))..---.......)).----------------- ( -14.80) >DroSec_CAF1 35172 98 + 1 ACAUGUGAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAGUCUGUCGAAA-UGGCAAGGUUUUCCCGGGG ...((((.((((...((((((((((..(((((........)))))..))))))))))..)))).)))).((((..((((-(......)))))..)))). ( -21.90) >DroEre_CAF1 42239 98 + 1 ACAUGUGAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAGUCUGUCGAAAGCGGGAAGGUUUUC-CCGGA ...((((.((((...((((((((((..(((((........)))))..))))))))))..)))).))))......(....)((((((....)))-))).. ( -26.00) >DroMoj_CAF1 46268 89 + 1 ACAUAUAAACAUAAAUAAUAAAAGCAUAUUAGUGUACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAG---GUAUGAAACAGAAAG-------CGAGA ........................(((((..(((..(((((((((........)))))))))..)))..---)))))..........-------..... ( -17.20) >DroAna_CAF1 33972 87 + 1 A----UAAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAGCAUGUCAAGAGCAUG-AGGU-------GGA .----...((((...((((((((((..(((((........)))))..))))))))))..)))).(((..(((((.....)))))-..))-------).. ( -21.60) >consensus ACAUGUAAGCAUAAAUAAUAAAAACAUAUUAGUGCACAUUUUAAUUCGUUUUUAUUAAAAUGCGCGCAGUCUGUCGAAAGCGGCAAGGU_____CGGGA ...............(((((......)))))((((.(((((((((........))))))))).))))................................ (-13.52 = -13.30 + -0.22)
Location | 905,992 – 906,091 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.60 |
Mean single sequence MFE | -17.23 |
Consensus MFE | -13.42 |
Energy contribution | -13.62 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.78 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.862693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 905992 99 - 22407834 UCCCGGGAAAACCUUGCCGCUUUCGACAGACUGCGCGCAUUUUAAUAAAAACGAAUUAAAAUGUGCACUAAUAUGUUUUUAUUAUUUAUGCUCACAUGU ....((.((....)).))((..((....))..))((((((((((((........))))))))))))....((((((...(((.....)))...)))))) ( -20.50) >DroVir_CAF1 47333 79 - 1 -----------------CGCUUUUUAC---CUGCGCGCAUUUUAAUAAAAACGAAUUAAAAUGUACACUAAUAUGCUUUUAUUAUUUAUGCUUAUAUUU -----------------(((.......---..))).((((..((((((((.((.((((..........)))).)).))))))))...))))........ ( -10.80) >DroSec_CAF1 35172 98 - 1 CCCCGGGAAAACCUUGCCA-UUUCGACAGACUGCGCGCAUUUUAAUAAAAACGAAUUAAAAUGUGCACUAAUAUGUUUUUAUUAUUUAUGCUCACAUGU ....((.((....)).)).-.....(((....((((((((((((((........))))))))))))..(((((......))))).....)).....))) ( -18.90) >DroEre_CAF1 42239 98 - 1 UCCGG-GAAAACCUUCCCGCUUUCGACAGACUGCGCGCAUUUUAAUAAAAACGAAUUAAAAUGUGCACUAAUAUGUUUUUAUUAUUUAUGCUCACAUGU ...((-(((....)))))((..((....))..))((((((((((((........))))))))))))....((((((...(((.....)))...)))))) ( -25.20) >DroMoj_CAF1 46268 89 - 1 UCUCG-------CUUUCUGUUUCAUAC---CUGCGCGCAUUUUAAUAAAAACGAAUUAAAAUGUACACUAAUAUGCUUUUAUUAUUUAUGUUUAUAUGU .....-------..........((((.---..(((..(((((((((........)))))))))..)..(((((......))))).....))...)))). ( -10.60) >DroAna_CAF1 33972 87 - 1 UCC-------ACCU-CAUGCUCUUGACAUGCUGCGCGCAUUUUAAUAAAAACGAAUUAAAAUGUGCACUAAUAUGUUUUUAUUAUUUAUGCUUA----U ...-------....-(((((....).))))..((((((((((((((........))))))))))))..(((((......))))).....))...----. ( -17.40) >consensus UCCCG_____ACCUUCCCGCUUUCGACAGACUGCGCGCAUUUUAAUAAAAACGAAUUAAAAUGUGCACUAAUAUGUUUUUAUUAUUUAUGCUCACAUGU ................................((((((((((((((........))))))))))))..(((((......))))).....))........ (-13.42 = -13.62 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:56 2006