Locus 3178

Sequence ID 2L_DroMel_CAF1
Location 9,099,944 – 9,100,053
Length 109
Max. P 0.534470
window5047

overview

Window 7

Location 9,099,944 – 9,100,053
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 95.87
Mean single sequence MFE -34.68
Consensus MFE -31.52
Energy contribution -31.84
Covariance contribution 0.32
Combinations/Pair 1.09
Mean z-score -1.14
Structure conservation index 0.91
SVM decision value 0.00
SVM RNA-class probability 0.534470
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9099944 109 - 22407834
CACAAAACAUCUGUAAUGAGGCCUUGGUGCAGUGCGUCGCAUUAUGAACGCGCCAUUUGAAGGAGACCAGCAAUGGCCGACUUGGGGCAAGAUGGCCAACACAAUAGGC
.........(((((..((.((((....(((.((((((((.....)).))))))...((.(((..(.(((....))).)..))).)))))....))))..))..))))). ( -30.30)
>DroSec_CAF1 2132 109 - 1
CACAAAACAUCUGUAAUGGGGCCUCGGUGCAGUGCGUCGCAUUAUGAACGCGCCAUUUGAAGGAGACCAGCAAUGGUCGACUUGGGGCAAGAUGGCCAACACAAUAGGC
.........(((((..((.((((((..(((.((((((((.....)).))))))...((.(((..(((((....)))))..))).))))).)).))))..))..))))). ( -36.80)
>DroSim_CAF1 2152 109 - 1
CACAAAACAUCUGUAAUGGGGCCUUGGUGCAGUGCGUCGCAUUAUGAACGCGCCAUUUGAAGGAGACCAGCAAUGGUCGACUUGGGGCAAGAUGGCCAACACAAUAGGC
.........(((((..((.((((....(((.((((((((.....)).))))))...((.(((..(((((....)))))..))).)))))....))))..))..))))). ( -36.10)
>DroEre_CAF1 2287 109 - 1
CACAAAACAUCUGUAAUGAGGCCUUGGUGCAGUGCGUCGCAUUAUGAACGCGCCAUUUGAGGGAGCGCGGCAAUGGCCAACUUGGGGCAAGAUGGCCAACACAAUAGGC
.........(((((..((..(((.((((((........)))))).....(((((........).)))))))..((((((.((((...)))).)))))).))..))))). ( -32.40)
>DroYak_CAF1 2346 109 - 1
CACAAAACAUCUGUAAUGAGGCCUUGGUGCAGUGCGUCGCAUUAUGAACGCGCCAUUUGAAGGAGGCCAGCAAUGGCCAACUCGGGGCAAGAUGGCCAACACAAUAGGC
.......(((((((..((((.((((.(....((((((((.....)).))))))....).)))).(((((....)))))..))))..)).)))))(((.........))) ( -37.80)
>consensus
CACAAAACAUCUGUAAUGAGGCCUUGGUGCAGUGCGUCGCAUUAUGAACGCGCCAUUUGAAGGAGACCAGCAAUGGCCGACUUGGGGCAAGAUGGCCAACACAAUAGGC
.........(((((..((.((((....(((.((((((((.....)).))))))...((.(((..(((((....)))))..))).)))))....))))..))..))))). (-31.52 = -31.84 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:10 2006