Locus 3177

Sequence ID 2L_DroMel_CAF1
Location 9,099,645 – 9,099,759
Length 114
Max. P 0.910367
window5046

overview

Window 6

Location 9,099,645 – 9,099,759
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 96.84
Mean single sequence MFE -24.72
Consensus MFE -22.04
Energy contribution -22.28
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.89
SVM decision value 1.07
SVM RNA-class probability 0.910367
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9099645 114 + 22407834
AUCCUUGCCAUUUCCCACUGCUCUCGAGCUCAAGAGAACACGUGUUCGGGCCACCUUCCGCCUCGACCAUGGACUGUUCCGUACACUUAACUUAUUUGGCUCCAUUAAAAUCUU
......((((........((.((((........)))).)).((((((((((........))).)))..(((((....)))))))))..........)))).............. ( -23.60)
>DroSec_CAF1 1833 114 + 1
AUCCUUGCCAUUUCCCACUGCUCUCGAGCUCAAGAGAACACGUGUUCGGGCCACCUUCCGCCUCGACCAUGGACUGCUCCGUACACUUAACUUAUUUGGCUCCAUUAAAAUCUU
......((((........((.((((........)))).)).((((((((((........))).)))..(((((....)))))))))..........)))).............. ( -23.60)
>DroSim_CAF1 1850 114 + 1
AUCCUUGCCAUUUCCCACUGCUCUCGAGCUCAAGAGAACACGUGUUCGGGCCACCUUCCGCCUCGACCAUGGACUGCUCCGUACACUUAACUUAUUUGGCUCCAUUAAAAUCUU
......((((........((.((((........)))).)).((((((((((........))).)))..(((((....)))))))))..........)))).............. ( -23.60)
>DroEre_CAF1 1969 110 + 1
AUCCUUGCCAUUUCCCACUGCUCUCGAGGUCGAGAGAACACGUGUUCGGGCCACCUUCCGCCUU--CCAUGGACU--UCCGUACACUUAACUUAUUUGGCUCCAUUAAAAUCUU
......((((..........((((((....)))))).....((((..((((........)))).--..((((...--.))))))))..........)))).............. ( -25.20)
>DroYak_CAF1 2040 114 + 1
AUCCUUGCCAUUUCCCACUGCUCUCGAGCUCAAGAGAACACGUGUUCGGGCCACCUUCCGCCUCGAGCAUGGACUGUUCCGUACACUUAACUUAUUUGGCUCCAUUAAAAUCUU
......((((.........(((....)))....(.((((((((((((((((........))).))))))))...))))))................)))).............. ( -27.60)
>consensus
AUCCUUGCCAUUUCCCACUGCUCUCGAGCUCAAGAGAACACGUGUUCGGGCCACCUUCCGCCUCGACCAUGGACUGCUCCGUACACUUAACUUAUUUGGCUCCAUUAAAAUCUU
......((((........((.((((........)))).)).((((((((((........))).)))..(((((....)))))))))..........)))).............. (-22.04 = -22.28 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:09 2006