Locus 3176

Sequence ID 2L_DroMel_CAF1
Location 9,098,439 – 9,098,559
Length 120
Max. P 0.719520
window5045

overview

Window 5

Location 9,098,439 – 9,098,559
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.58
Mean single sequence MFE -30.35
Consensus MFE -24.28
Energy contribution -24.44
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.80
SVM decision value 0.40
SVM RNA-class probability 0.719520
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9098439 120 - 22407834
AAGGCAUCGACAAUGGCGAGUUCAUCUCAUCAUGAGCCUCAUCUGCAUUCGCUGCCAAAACUUAUUGCAGCCUGCGGAAAAAUGCCAAAUUCCACACCCAAAAUACGGCUGAAGCAGAUG
....((((..(..((((((((((((......))))).))).((((((...(((((...........))))).)))))).....)))).......((.((.......)).))..)..)))) ( -31.40)
>DroSec_CAF1 667 104 - 1
AAGGCAUCGACAAUAGCGAGUUCAUCUCAUCAUGAGCCUCAUCUGCAUUCGCUGCCAAAACUUAUUGCAGCCUGCGGGAAAAUGCCAAAUUCCACACCC----------------AGAUG
..(((((..........((((((((......))))).))).((((((...(((((...........))))).))))))...))))).............----------------..... ( -26.10)
>DroSim_CAF1 668 120 - 1
AAGGCAUCGACAAUAGCGAGUUCAUCUCAUCAUGAGCCUCAUCUGCAUUCGCUGCCAAAACUUAUUGCAGCCUGCGGAAAAAUGCCAAAUUCCACACCCAAAAUACGGCUGUAGCAGAUG
....((((..(.(((((((((((((......))))).))).((((((...(((((...........))))).)))))).............................))))).)..)))) ( -30.00)
>DroEre_CAF1 608 120 - 1
AAGGCAUCAGCAAAGGCGAGUUCAUCUCAUCAUGAGCCGCAUCUGCAUUCGCUGCCAAAAGUUAUUGCAGCCUCCGGGAAAAUGCCGAAUUCCACACCCAAUAUGCGGCUGUAGCAGAUG
..(((.(((((....))(((.....)))....)))))).(((((((....(((......)))...(((((((..(((.......))).......((.......)).)))))))))))))) ( -33.70)
>DroYak_CAF1 684 120 - 1
AAGGCAUCAACAAAGAAGAGUUCAUCUCAUCAUGAGCCUCAUCUGCAUGCGCUGCCAAAAGUUAUUGCAGCCUGCGGGAAAAUGCCAAAUUCCACACCCAAAAUACGGCAAUAGCAGAUG
.((((.(((.....((.(((.....))).)).)))))))(((((((.((((((((...........)))))..)))......((((....................))))...))))))) ( -30.55)
>consensus
AAGGCAUCGACAAUGGCGAGUUCAUCUCAUCAUGAGCCUCAUCUGCAUUCGCUGCCAAAACUUAUUGCAGCCUGCGGGAAAAUGCCAAAUUCCACACCCAAAAUACGGCUGUAGCAGAUG
..(((((..........((((((((......))))).))).((((((...(((((...........))))).))))))...))))).................................. (-24.28 = -24.44 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:08 2006