Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,098,259 – 9,098,360 |
Length | 101 |
Max. P | 0.832159 |
Location | 9,098,259 – 9,098,360 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.18 |
Mean single sequence MFE | -33.12 |
Consensus MFE | -17.55 |
Energy contribution | -19.80 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.13 |
Mean z-score | -2.78 |
Structure conservation index | 0.53 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9098259 101 - 22407834 ------------GU------CUGUAAAAAUAUAUAUGUUGCAUAGUCUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC ------------((------((((...........((((((.(((((((((((((.........)))....((((((.........)))))).)))))))))))))))).))))))... ( -35.30) >DroGri_CAF1 29098 93 - 1 ------------GUUGAAUGCAGCGAAAGCUCAGCU----------AUGUGCAACGGCUAAAUUACU-CGAGCUGUUUGACUUAAUGGUC---GCUCAGAUUGGCAGCAAACAGACGUC ------------(((...((((((....)))..(((----------(((.(((((((((........-..))))))).((((....))))---)).))...)))).)))....)))... ( -27.10) >DroSec_CAF1 487 101 - 1 ------------GU------CUGUAAAAAUAUAUAUGUUGCAUAGUCUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC ------------((------((((...........((((((.(((((((((((((.........)))....((((((.........)))))).)))))))))))))))).))))))... ( -35.30) >DroSim_CAF1 488 101 - 1 ------------GU------CUGUAAAAAUAUAUAUGUUGCAUAGUCUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC ------------((------((((...........((((((.(((((((((((((.........)))....((((((.........)))))).)))))))))))))))).))))))... ( -35.30) >DroEre_CAF1 428 101 - 1 ------------GU------CUGUAAAAAUAGAUAUUUUGCAGAGUCUGGGUGGCUUUCCAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC ------------((------((((.(((((....)))))((..((((((((((((...(((.(((..((((.....))))..))))))..)))))))))))).)).....))))))... ( -34.60) >DroYak_CAF1 492 113 - 1 GGCAGGCUGUCUGU------CUGUAAAAAUAUAUAUGUUGCAGAGUAUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC ....(((.((((((------.((((......))))((((((.((...((((((((.........)))....((((((.........)))))).)))))..)).)))))).))))))))) ( -31.10) >consensus ____________GU______CUGUAAAAAUAUAUAUGUUGCAUAGUCUGGGUAGCUUUCAAAUUGCUUCAAACGGUUUGACUUAAUGGCCGUCGCCCAGAUUGGCAGCAAACAGACGUC ...................................((((((...(((((((((((.........)))....((((((.........)))))).))))))))..)))))).......... (-17.55 = -19.80 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:07 2006