Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,096,268 – 9,096,366 |
Length | 98 |
Max. P | 0.605979 |
Location | 9,096,268 – 9,096,366 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 85.61 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -25.64 |
Energy contribution | -25.42 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.27 |
Mean z-score | -1.86 |
Structure conservation index | 0.80 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9096268 98 + 22407834 --UUACAUCGAAUUUCCAAAUUGUGGGUAGUGGACGGACUAAACCACUAUGGUGGUUCGCAUCGAGCUUUGCCGUGGUUGUUGUUCGAUGAUUUUGGGUA --...((((((((.....(((..((((((((((..........)))))))...((((((...))))))...)))..)))...)))))))).......... ( -29.50) >DroSec_CAF1 90327 98 + 1 --UUACAUCGAAUUUCCCAAUUGUGGGUAGUGGACGGACUAAACCACUUUGGUGGUUCGCAUCGAGCUUUGCCGUGGUUGCUAUUCGAUGAUUUUGGGGA --...((((((((....((((..(((..(((.((((((((..(((.....)))))))))..))..)))...)))..))))..)))))))).......... ( -29.80) >DroSim_CAF1 95431 98 + 1 --UUACAUCGAAUUUCCAAAUUGUGGCUAGUGGACGGACUAAACCACUUUGGUGGUUCGCAUCGAGCUUUGCCGUGGUUGCUGUUCGAUGAUUUUGGGGA --...((((((((.....(((..((((.(((.((((((((..(((.....)))))))))..))..)))..))))..)))...)))))))).......... ( -31.80) >DroEre_CAF1 92469 98 + 1 --UUACAUCGAAUUGCCAAAUUGUGGGUAGUGGACGGACUAAACCACUUUGGUGGUUCGCACCGAGCUUUGCCGUGGUUGCUGUUCGAUGAUUUUGGGGA --...((((((((.((..(((..(((..(((...(((....((((((....))))))....))).)))...)))..))))).)))))))).......... ( -32.40) >DroYak_CAF1 92825 98 + 1 --UUACAUCGAAUUGCCAAAUUGUGGGUAGUGGAGGGACUAAACCACUUUAGUGGUUCGCACCGAGCUUUGCCGUGGUUGCAGUUCGAUGAUUUUGGGGA --...(((((((((((..(((..(((..(((...((..(..((((((....)))))).)..))..)))...)))..)))))))))))))).......... ( -35.70) >DroAna_CAF1 103542 100 + 1 UCUCGCUGCAAGCCAGUGAACUGUGGUUAGUGGACCGAACAAACCACUUUAGUGGUUGCCACUGAGCUUUGCUGUGGCGAUGGUUUGAUGAUUUUAAGGA ..((((..((.(((((....))).(.(((((((........((((((....)))))).))))))).)...))))..)))).................... ( -32.80) >consensus __UUACAUCGAAUUUCCAAAUUGUGGGUAGUGGACGGACUAAACCACUUUGGUGGUUCGCACCGAGCUUUGCCGUGGUUGCUGUUCGAUGAUUUUGGGGA .....((((((((.....(((..(((..(((...(((....((((((....))))))....))).)))...)))..)))...)))))))).......... (-25.64 = -25.42 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:06 2006