Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,081,077 – 9,081,178 |
Length | 101 |
Max. P | 0.996096 |
Location | 9,081,077 – 9,081,178 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.88 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -23.98 |
Energy contribution | -25.06 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.21 |
Mean z-score | -2.60 |
Structure conservation index | 0.82 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9081077 101 - 22407834 CUCACGUAUCGAGGUAGAAAGACUCAAACGGUUUGGGUUCAACAAUAGUUGAGCCAAAGAACCGGAAAAGUCGACUACUUUUGAUCUUUAACUUCAUCUGA .....(.((((((((((...((((....((((((.((((((((....))))))))...))))))....))))..)))).)))))))............... ( -33.20) >DroSec_CAF1 74965 99 - 1 CUCACGUAUCGAGGUAGA-AGACUCAAGCGGUUUGGGUUCAACAAUAGUUGAGC-AAAGAACCGGAAAAGUCGACUACUUUUGAUCUUUAACUUCAUCUGA .....(.((((((((((.-.((((....((((((..(((((((....)))))))-...))))))....))))..)))).)))))))............... ( -30.60) >DroSim_CAF1 80344 100 - 1 CUCACGUAUCGAGGUAGA-AGACUCAAGCGGUUUGGGUUCAACAAUAGUUGAGCCAAAGAACCGGAAAAGUCGACUACUUUUGAUCUUUAACUUCAUCUGA .....(.((((((((((.-.((((....((((((.((((((((....))))))))...))))))....))))..)))).)))))))............... ( -33.50) >DroEre_CAF1 77169 101 - 1 CUCACGUAUCGGGAAGGAAAGAUACAAUCGGUAUGGGUUGGACAAUAGUUGAGCCAAAGAGCCGGAAAAGUCGACUACUUUUGAUAUUUGACUUCAUCCGA (((.((((((((...(........)..))))))))((((.(((....))).))))...))).((((.(((((((.(((....).)).)))))))..)))). ( -28.30) >DroYak_CAF1 77162 101 - 1 CUCACGUAUUGGCAAAGAAAGACUCAAACGGUAUGGGUUGAACAAUAGUUGAGCCAAAGAGCCGGAAAAGUCGACUACUUUUGAUAUUUAACUUCAUCUGA .....((((..(........((((....((((.(.((((.(((....))).))))...).))))....))))........)..)))).............. ( -19.89) >consensus CUCACGUAUCGAGGUAGAAAGACUCAAACGGUUUGGGUUCAACAAUAGUUGAGCCAAAGAACCGGAAAAGUCGACUACUUUUGAUCUUUAACUUCAUCUGA .......((((((((((...((((....((((((.((((((((....))))))))...))))))....))))..)))).))))))................ (-23.98 = -25.06 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:05 2006