Locus 3171

Sequence ID 2L_DroMel_CAF1
Location 9,077,258 – 9,077,375
Length 117
Max. P 0.804742
window5040

overview

Window 0

Location 9,077,258 – 9,077,375
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.20
Mean single sequence MFE -35.46
Consensus MFE -20.93
Energy contribution -22.25
Covariance contribution 1.32
Combinations/Pair 1.26
Mean z-score -1.96
Structure conservation index 0.59
SVM decision value 0.63
SVM RNA-class probability 0.804742
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9077258 117 + 22407834
UAUUAUAGCUACUGGUGUGCUGAACAUCCUGGGCAUUUCCUUUUUCGUGGCCCAGCCAAAGGAUCGAUGCUCGGCAGCUCCACCCGUUGGAAAGUAUAUCUUCCUACUAGCUAUUCU
....(((((((..((((.((((......((((((((((((((.....((((...)))))))))..)))))))))))))..)))).((.((((........)))).)))))))))... ( -38.60)
>DroSec_CAF1 71007 117 + 1
UAUUAUAGCUACUGGUGUGCUGAACACACUGGGCAUUUCCUUUUUCGUGGCCCAGCCAAAGGAUCGAUGUUCGGCAGCUCCUCCCGUUGGAAAGUAUAUCUUCCUACUAGCCAUACU
...(((.((((..((.(((((((((((.((((((...............))))))((...))...).))))))))).).))....((.((((........)))).)))))).))).. ( -31.96)
>DroSim_CAF1 76421 117 + 1
UAUUAUAGCUACUGGUGUGCUGAACACUCUGGGCAUAUCCUUUUUCGUGGACCAGCCAAAGGAUCGAUGUUCGGCAGCUCCUCCCGUUGGAAAGUAUAUCUUCCUACUAGCCAUACU
...(((.((((..((.((((((((((.(((.(((...(((........)))...)))...)))....))))))))).).))....((.((((........)))).)))))).))).. ( -32.40)
>DroEre_CAF1 73312 100 + 1
GAUUGUGGCUACCGGUGUGCUGAACAUCCUGGGCACAUCCUUUUUCGUGGCCCAGCCAAAGGAUCAAUGCUC-----------------GAAAGUACAUCUUCCUACUGGCCAUACA
...((((((((..(((((.....)))))((((((.(((........)))))))))....((((...(((..(-----------------....)..)))..))))..)))))))).. ( -34.00)
>DroYak_CAF1 73391 117 + 1
GAUUGUGGCUAGCGGUGUGCUGAACAUCCUGGGCAUAUCCUUUUUCGUGGCCCAGCCAAAGGAUCAAUGCUCGCCAGCUCCUCCCGUUGGAAAGUACAUCUUCCUACUGGCCACACU
...(((((((((.((((((((.........((((((((((((.....((((...))))))))))..)))))).(((((.......)))))..))))))))......))))))))).. ( -43.80)
>DroAna_CAF1 76995 117 + 1
GAUUGCGAUAACUGGAGUGCUGCAGGUUAUGGGCAUAUCGUUUUUUGUGAACCAGCCAAAUAAUCAAUGCUCGCCGGCACCCUCUUUGGGCGCAUAUCUUUUCCUGCUGGCCAUCCU
.............(((..((((((((....((((((...(((.((((.(......))))).)))..))))))....((.(((.....))).)).........))))).)))..))). ( -32.00)
>consensus
GAUUAUAGCUACUGGUGUGCUGAACAUCCUGGGCAUAUCCUUUUUCGUGGCCCAGCCAAAGGAUCAAUGCUCGGCAGCUCCUCCCGUUGGAAAGUAUAUCUUCCUACUAGCCAUACU
...((((((((..((((((((.........((((((((((((.....(((.....)))))))))..))))))......(((.......))).)))))))).......)))))))).. (-20.93 = -22.25 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:03 2006