Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,076,304 – 9,076,399 |
Length | 95 |
Max. P | 0.703909 |
Location | 9,076,304 – 9,076,399 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 87.04 |
Mean single sequence MFE | -25.57 |
Consensus MFE | -20.40 |
Energy contribution | -22.35 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.09 |
Mean z-score | -2.29 |
Structure conservation index | 0.80 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9076304 95 - 22407834 ACCUUAGGCCCAGCCAGAGGCUUUUCAUGGGAGGGGCCUUGAACAAACAUUGACC--AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC .......((...(((.((((((((((....)))))))))).......(((((((.--...)))))))............)))...)).......... ( -27.00) >DroSec_CAF1 70032 95 - 1 ACCUUAGGCAUAGCCAGAGGCUUUUCAUAGGAGGGGCCUUGAACAAACAUUGACC--AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC .......((...(((.((((((((((....)))))))))).......(((((((.--...)))))))............)))...)).......... ( -27.00) >DroSim_CAF1 75453 95 - 1 ACCUUAGGCCCAGCCAGAGGCUUUUCAUAGGAGGGGCCUUGAACAAACAUUGACC--AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC .......((...(((.((((((((((....)))))))))).......(((((((.--...)))))))............)))...)).......... ( -27.00) >DroEre_CAF1 72325 95 - 1 UCCCUAGGCCCAGCCACAGGCUUUUCAUAGGAGGGGCCUUGAACAAACAUUGACC--AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC .......((...(((..(((((((((....)))))))))........(((((((.--...)))))))............)))...)).......... ( -25.10) >DroYak_CAF1 72402 95 - 1 GCCUUAGGCCUAGCCAGAGGCAUUCCACAGGAGGGGCCAUGAACAAGCAUUGACC--AAAGUCAAUGGCAAAACUUUUUGGUGCAGCAAUAAAAAUC (((((.(((...))).)))))......(((((((.((((((......))(((((.--...)))))))))....)))))))................. ( -26.00) >DroAna_CAF1 75587 88 - 1 ACUUUGGGCGUAUCCCGGGG---------GAAUGGGAGUCGAACAAACAUUGACCGAAAAGUCAAUGACAAAACUUUUUGGCGCAGCAAUAAAAAUC ...(((.((((.(((((...---------...)))))..........(((((((......))))))).............))))..)))........ ( -21.30) >consensus ACCUUAGGCCCAGCCAGAGGCUUUUCAUAGGAGGGGCCUUGAACAAACAUUGACC__AAAGUCAAUGACAAAACUUUUCGGUGCAGCAAUAAAAAUC .......((...(((.((((((((((....)))))))))).......(((((((......)))))))............)))...)).......... (-20.40 = -22.35 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:02 2006