Locus 317

Sequence ID 2L_DroMel_CAF1
Location 905,591 – 905,685
Length 94
Max. P 0.799923
window507

overview

Window 7

Location 905,591 – 905,685
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.72
Mean single sequence MFE -30.44
Consensus MFE -15.26
Energy contribution -18.40
Covariance contribution 3.14
Combinations/Pair 1.12
Mean z-score -2.43
Structure conservation index 0.50
SVM decision value 0.61
SVM RNA-class probability 0.799923
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 905591 94 - 22407834
GAGGUUGGAAAUGAGCAUGAGAUUGAGCCGGAGGACGAUGAACACAAGUGGGUAAACCGCUUUCGU---------UGAGCUCGGUCUAUGGCUCAUAAUUUGU
..........((((((...((((((((((....).(((((((....(((((.....))))))))))---------)).)))))))))...))))))....... ( -32.50)
>DroPse_CAF1 31874 91 - 1
-UGGCUGGAGCU---CAUGA-----AGCCCAAG---GAUGAGUACAAGUGGGUAAACCGCUUUCGUUGAGGCACUUGAGUUGAGUCGGUGGCUUAUAAUUUGU
-.((((.((.((---((...-----.((((((.---((.......((((((.....)))))))).))).)))...)))))).))))................. ( -25.81)
>DroSec_CAF1 34771 94 - 1
GAGGUUGGAAAUGAGCAUGAGAUUGAGCCGGAGGACGAUGAACACAAGUGGGUAAACCGCUUUCGU---------UGAGCUCAGUCUAUGGCUCAUAAUUUGU
..........((((((...((((((((((....).(((((((....(((((.....))))))))))---------)).)))))))))...))))))....... ( -33.30)
>DroSim_CAF1 32546 94 - 1
GAGGUUGGAAAUGAGCAUGAGAUUGAGCCGGAGGACGAUGAACACAAGUGGGUAAACCGCUUUCGU---------UGAGCUCAGUCUAUGGCUCAUAAUUUGU
..........((((((...((((((((((....).(((((((....(((((.....))))))))))---------)).)))))))))...))))))....... ( -33.30)
>DroEre_CAF1 41836 93 - 1
GAGGUUGGAAAUGAGGAUGAGAUUGAGCCGGA-GACGAUGAACACAAGUGGGUAAACCGCUUUCCU---------UCAGCUCAGUCCAUGGCUCAUAAUUUGU
..........(((((.(((.((((((((((..-..)).((((...((((((.....))))))...)---------))))))))))))))..)))))....... ( -31.90)
>DroPer_CAF1 31796 91 - 1
-UGGCUGGAGCU---CAUGA-----AGCCCAAG---GAUGAGUACAAGUGGGUAAACCGCUUUCGUUGAGGCACUUGAGUUGAGUCGGUGGCUUAUAAUUUGU
-.((((.((.((---((...-----.((((((.---((.......((((((.....)))))))).))).)))...)))))).))))................. ( -25.81)
>consensus
GAGGUUGGAAAUGAGCAUGAGAUUGAGCCGGAGGACGAUGAACACAAGUGGGUAAACCGCUUUCGU_________UGAGCUCAGUCUAUGGCUCAUAAUUUGU
..........((((((....((((((((((.....))(((((....(((((.....))))))))))............))))))))....))))))....... (-15.26 = -18.40 +   3.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:53 2006